GNU bug report logs - #60885
[PATCH 0/4] Some bioinfo packages

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From: Simon Tournier <zimon.toutoune <at> gmail.com>
To: 60885 <at> debbugs.gnu.org
Cc: Simon Tournier <zimon.toutoune <at> gmail.com>
Subject: [bug#60885] [PATCH 1/4] gnu: Add python-vireosnp.
Date: Tue, 17 Jan 2023 18:30:38 +0100

* gnu/packages/bioinformatics.scm (python-vireosnp): New variable.
---
 gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e60dffc21e..5fc2d18690 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -17604,6 +17604,28 @@ (define-public r-kbet
       ;; Any version of the GPL
       (license license:gpl3+))))
 
+(define-public python-vireosnp
+  (package
+    (name "python-vireosnp")
+    (version "0.5.7")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "vireoSNP" version))
+              (sha256
+               (base32
+                "02ybhzivsxwnb1axlgbs63wni1j27xajnkl4jw1ps5vmsz2l4b0d"))))
+    (build-system python-build-system)
+    (propagated-inputs (list python-matplotlib python-numpy python-scipy))
+    (home-page "https://github.com/huangyh09/vireoSNP")
+    (synopsis "Deconvolution based on SNP for multiplexed scRNA-seq data")
+    (description
+     "This package provides a deconvolution based on Single Nucleotide
+Position (SNP) for multiplexed scRNA-seq data.  The name vireo stand for
+Variational Inference for Reconstructing Ensemble Origin by expressed SNPs in
+multiplexed scRNA-seq data and follows the clone identification from
+single-cell data named @url{https://github.com/PMBio/cardelino, cardelino}.")
+    (license license:asl2.0)))
+
 (define-public ccwl
   (package
     (name "ccwl")
-- 
2.38.1

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