GNU bug report logs - #60885
[PATCH 0/4] Some bioinfo packages

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Simon Tournier <zimon.toutoune <at> gmail.com>
Subject: bug#60885: closed ([PATCH 0/4] Some bioinfo packages)
Date: Fri, 20 Jan 2023 09:58:02 +0000

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Your bug report

#60885: [PATCH 0/4] Some bioinfo packages

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 60885 <at> debbugs.gnu.org.

-- 
60885: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=60885
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 60885-done <at> debbugs.gnu.org
Subject: [PATCH 0/4] Some bioinfo packages
Date: Fri, 20 Jan 2023 10:56:54 +0100

Thank you for the patches!  I applied them with very minor changes to
descriptions.

-- 
Ricardo

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From: Simon Tournier <zimon.toutoune <at> gmail.com>
To: guix-patches <at> gnu.org
Cc: Simon Tournier <zimon.toutoune <at> gmail.com>
Subject: [PATCH 0/4] Some bioinfo packages
Date: Tue, 17 Jan 2023 18:26:50 +0100

Hi,

Here some pacakages used in Bioinformatics.

Note that the package numbat comes with 'bin/pileup_and_phase.R' for preparing
the data, as explained in online documentation [1].

Here, this script goes under 'site-library/numbat/bin' which does not
perfectly match the online documentation mentioning 'numbat/inst/bin/'
instead.

1: https://kharchenkolab.github.io/numbat/articles/numbat.html

Cheers,
simon

Simon Tournier (4):
  gnu: Add python-vireosnp.
  gnu: Add r-scistreer.
  gnu: Add r-roptim.
  gnu: Add r-numbat.

 gnu/packages/bioconductor.scm   | 106 +++++++++++++++++++++++++++++++-
 gnu/packages/bioinformatics.scm |  22 +++++++
 gnu/packages/cran.scm           |  23 ++++++-
 3 files changed, 149 insertions(+), 2 deletions(-)


base-commit: ecda67a577570f412b103e5dd8ed1a44193a9c11
-- 
2.38.1

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