GNU bug report logs - #60877
[PATCH] gnu: Add r-baseline, r-missforest, r-speaq and r-alpsnmr

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <60877 <at> debbugs.gnu.org>
Cc: rekado <at> elephly.net
Subject: [bug#60877] [PATCH 4/4] gnu: Add r-alpsnmr.
Date: Tue, 17 Jan 2023 13:25:38 +0100

* gnu/packages/bioconductor.scm (r-alpsnmr): New variable.
---
 gnu/packages/bioconductor.scm | 53 +++++++++++++++++++++++++++++++++++
 1 file changed, 53 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7498c3a767..118f218f4b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2598,6 +2598,59 @@ (define-public r-alpine
 data.")
     (license license:gpl2+)))
 
+(define-public r-alpsnmr
+  (package
+    (name "r-alpsnmr")
+    (version "4.0.2")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AlpsNMR" version))
+              (sha256
+               (base32
+                "1y4qqc6l8flv5ns4qwzjwmcykm6zcm4jg097mn8xyp7mnxymy7pl"))))
+    (properties `((upstream-name . "AlpsNMR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-baseline
+           r-biocparallel
+           r-dplyr
+           r-fs
+           r-future
+           r-generics
+           r-ggplot2
+           r-glue
+           r-htmltools
+           r-magrittr
+           r-matrixstats
+           r-mixomics
+           r-pcapp
+           r-purrr
+           r-readxl
+           r-reshape2
+           r-rlang
+           r-rmarkdown
+           r-scales
+           r-signal
+           r-speaq
+           r-stringr
+           r-tibble
+           r-tidyr
+           r-tidyselect
+           r-vctrs))
+    (native-inputs (list r-knitr))
+    (home-page "https://sipss.github.io/AlpsNMR/")
+    (synopsis "Automated spectral processing system for NMR")
+    (description
+     "This package reads Bruker @acronym{NMR, Nuclear Magnetic Resonance} data
+directories both zipped and unzipped.  It provides automated and efficient signal
+processing for untargeted NMR metabolomics.  It is able to interpolate the samples,
+detect outliers, exclude regions, normalize, detect peaks, align the spectra,
+integrate peaks, manage metadata and visualize the spectra.  After spectra
+proccessing, it can apply multivariate analysis on extracted data.  Efficient
+plotting with 1-D data is also available.  Basic reading of 1D ACD/Labs exported
+JDX samples is also available.")
+    (license license:expat)))
+
 (define-public r-altcdfenvs
   (package
     (name "r-altcdfenvs")
-- 
2.38.1

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