From unknown Thu Jun 19 14:06:17 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#60785 <60785@debbugs.gnu.org> To: bug#60785 <60785@debbugs.gnu.org> Subject: Status: [PATCH] gnu: Add r-maser. Reply-To: bug#60785 <60785@debbugs.gnu.org> Date: Thu, 19 Jun 2025 21:06:17 +0000 retitle 60785 [PATCH] gnu: Add r-maser. reassign 60785 guix-patches submitter 60785 M=C4=83d=C4=83lin Ionel Patra=C8=99cu severity 60785 normal tag 60785 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Fri Jan 13 10:07:59 2023 Received: (at submit) by debbugs.gnu.org; 13 Jan 2023 15:07:59 +0000 Received: from localhost ([127.0.0.1]:52123 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pGLex-0004zS-D2 for submit@debbugs.gnu.org; Fri, 13 Jan 2023 10:07:59 -0500 Received: from lists.gnu.org ([209.51.188.17]:45358) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pGLes-0004zH-F7 for submit@debbugs.gnu.org; Fri, 13 Jan 2023 10:07:57 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pGLem-0001V3-1w for guix-patches@gnu.org; Fri, 13 Jan 2023 10:07:49 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pGLeg-00068o-Ht for guix-patches@gnu.org; Fri, 13 Jan 2023 10:07:47 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1673622448; x=1675436849; bh=bzGgL+NnM04SAax WbbtygTlWvQo7bxjHnbe6okS4gts=; b=A4KLghHMoBqj4v+iSKBqd5y/oiPtd39 35WhdykpsNRj2bJu91f3n7I2YbinWvuMz55biZAw7GONVeV+9tgy7sV+quy7esa1 yPiJiQkdI3O40O4pOzDksFY3uaQ03wFvsHjIExjMjnpWivBo8d34cKn+F2NbpS0I OiWjO3u+Jzrs= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 0FAE130021E for ; Fri, 13 Jan 2023 16:07:27 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.16; Fri, 13 Jan 2023 16:07:27 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-maser. Date: Fri, 13 Jan 2023 16:07:16 +0100 Message-ID: <20230113150716.202509-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27382.007 X-TM-AS-Result: No-10--6.441000-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEHwP NZT6pGXGRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v8XjfR3d0weRm1/OiWPM9c7T5D +tWniw5qGsZX0q3FpiOhAZQXEXXZuTvHzGcGqiIKrm7DrUlmNkIAy6p60ZV62fJ5/bZ6npdjKay T/BQTiGrEr7W2UZfO2hm9+SOEShZA00Bl0iQ7ggDvOc5de5pnX53f3bqoWt/s= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.441000-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27382.007 X-TM-SNTS-SMTP: 7970663D955A59597585E1C5730E0FC11C9211A3249D521C44CA9AB84D03A95A2002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-maser): New variable. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c2fa26cb59..ca236bcf75 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6274,6 +6274,38 @@ (define-public r-makecdfenv package that automatically loads that environment.") (license license:gpl2+))) +(define-public r-maser + (package + (name "r-maser") + (version "1.16.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "maser" version)) + (sha256 + (base32 + "1zycx8s046g4d3w5qrn950bmi0nrnq1g7fvqji48mr6hmsyzplvv")))) + (properties `((upstream-name . "maser"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocgenerics + r-data-table + r-dplyr + r-dt + r-genomeinfodb + r-genomicranges + r-ggplot2 + r-gviz + r-iranges + r-reshape2 + r-rtracklayer)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/DiogoVeiga/maser") + (synopsis "Mapping alternative splicing events to proteins") + (description + "This package provides functionalities for downstream analysis, annotation +and visualizaton of alternative splicing events generated by rMATS.") + (license license:expat))) + (define-public r-metaneighbor (package (name "r-metaneighbor") base-commit: 789d73234d5b6bbd83bb054146d5bbd1d374d51a -- 2.38.1 From debbugs-submit-bounces@debbugs.gnu.org Sat Jan 14 02:19:01 2023 Received: (at 60785-done) by debbugs.gnu.org; 14 Jan 2023 07:19:01 +0000 Received: from localhost ([127.0.0.1]:53093 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pGaof-0007oR-2B for submit@debbugs.gnu.org; Sat, 14 Jan 2023 02:19:01 -0500 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21021) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pGaob-0007oG-Sr for 60785-done@debbugs.gnu.org; Sat, 14 Jan 2023 02:18:59 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1673680734; cv=none; d=zohomail.com; s=zohoarc; b=LsfaKSiBz5/mkMxI5gNAjAYJOyWagvfORPguVxD9EzgoFpQ2PakOYvfcA24Rf2xed+1Ux/+TA2jkbosYUrUdE5LB/5FJ/CgmDZ0ZO72XBOyMvgh8eGJ5aIRaE/3PESgUScS/JxGv8+mlTbVUfdzfC2/8ZIFWaKWre9Z/BfQ6C1c= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1673680734; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=lt940GZtwDAZLtRSfxfgEEjNAT4GKd0sHBbxjsvea50=; b=HxRlLe55DYp11t1BexWd2rFsBixTfGWwqaMB5jIsWmimCNZvPot0xEhL+SHcSj5mFjiSzRvfpG9xLzRRWNe5hsahEnuyhYQF4xBG0wJdkv/BGMF+hgoxwDQ4b60o9e2AUhvuJp26+pyNjbsJVGyqGZSNltSOaqWExHDKI25HTfE= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1673680734; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=lt940GZtwDAZLtRSfxfgEEjNAT4GKd0sHBbxjsvea50=; b=OYUCWwkD2OPwLnRkD8zu4ODgRxZ5CuRLGtHT7sK8C3qoQXHADyzWdNieCpkRiIdq hJNrNVDwggc2E1WvNgWVauqEYWc2RXNyGC6QykMq/ObTRphz0pDTyhO4had8/YrBrqQ Q9xnKpQDCX/cPlQff4xa6ttZiQOw3bCl1L7LFQ0I= Received: from localhost (243-109-142-46.pool.kielnet.net [46.142.109.243]) by mx.zohomail.com with SMTPS id 1673680733073652.827717114425; Fri, 13 Jan 2023 23:18:53 -0800 (PST) References: <20230113150716.202509-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.8.13; emacs 28.2 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#60785] [PATCH] gnu: Add r-maser. Date: Sat, 14 Jan 2023 08:18:33 +0100 In-reply-to: <20230113150716.202509-1-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87wn5pk2hy.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 60785-done Cc: 60785-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/bioconductor.scm (r-maser): New variable. Applied, thanks! --=20 Ricardo From unknown Thu Jun 19 14:06:17 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 11 Feb 2023 12:24:13 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator