GNU bug report logs - #59835
[PATCH] gnu: Add r-makecdfenv, r-altcdfenvs and r-harshlight.

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <59835 <at> debbugs.gnu.org>
Cc: rekado <at> elephly.net
Subject: [bug#59835] [PATCH 1/3] gnu: Add r-makecdfenv.
Date: Mon, 5 Dec 2022 16:21:51 +0100

* gnu/packages/bioconductor.scm (r-makecdfenv): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c62c5970b8..7cace3317c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6010,6 +6010,33 @@ (define-public r-made4
 datasets (coinertia analysis).")
     (license license:artistic2.0)))
 
+(define-public r-makecdfenv
+  (package
+    (name "r-makecdfenv")
+    (version "1.74.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "makecdfenv" version))
+              (sha256
+               (base32
+                "0bvj5dg6yfjnhga1z8788zmb98d8shyz8pzz0ggnml87c1p2gy25"))))
+    (properties `((upstream-name . "makecdfenv")))
+    (build-system r-build-system)
+    (inputs (list zlib))
+    (propagated-inputs
+     (list r-affy
+           r-affyio
+           r-biobase
+           r-zlibbioc))
+    (home-page "https://bioconductor.org/packages/makecdfenv")
+    (synopsis "Chip description file environment maker")
+    (description
+     "This package implements two functions.  One of them reads an @code{Affymetrix}
+@acronym{CDF, chip description file} and creates a hash table environment containing
+the location/probe set membership mapping.  The other one creates a package that
+automatically loads that environment.")
+    (license license:gpl2+)))
+
 (define-public r-metaneighbor
   (package
     (name "r-metaneighbor")

base-commit: b2a848d23d37f31496e1ff664f1dcf6abcdcc388
-- 
2.38.1

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