GNU bug report logs - #59672
[PATCH] gnu: Add r-metaneighbor.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#59672: closed ([PATCH] gnu: Add r-metaneighbor.)
Date: Thu, 01 Dec 2022 10:51:02 +0000

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Your bug report

#59672: [PATCH] gnu: Add r-metaneighbor.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 59672 <at> debbugs.gnu.org.

-- 
59672: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=59672
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 59672-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-metaneighbor.
Date: Thu, 01 Dec 2022 11:50:28 +0100

Applied, thanks!

-- 
Ricardo

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-metaneighbor.
Date: Tue, 29 Nov 2022 09:00:56 +0100

* gnu/packages/bioconductor.scm (r-metaneighbor): New variable.
---
 gnu/packages/bioconductor.scm | 36 +++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 39c9c6f809..c3e0548b45 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6010,6 +6010,42 @@ (define-public r-made4
 datasets (coinertia analysis).")
     (license license:artistic2.0)))
 
+(define-public r-metaneighbor
+  (package
+    (name "r-metaneighbor")
+    (version "1.18.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "MetaNeighbor" version))
+              (sha256
+               (base32
+                "1gjjp5qlmv26sd3fvrd8cgv3invckxr8ldjpizpqm4mxjzifxwpm"))))
+    (properties `((upstream-name . "MetaNeighbor")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-beanplot
+           r-dplyr
+           r-ggplot2
+           r-gplots
+           r-igraph
+           r-matrix
+           r-matrixstats
+           r-rcolorbrewer
+           r-singlecellexperiment
+           r-summarizedexperiment
+           r-tibble
+           r-tidyr))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/MetaNeighbor")
+    (synopsis "Single cell replicability analysis")
+    (description
+     "This package implements a method to rapidly assess cell type identity using
+both functional and random gene sets and it allows users to quantify cell type
+replicability across datasets using neighbor voting.  @code{MetaNeighbor} works
+on the basis that cells of the same type should have more similar gene expression
+profiles than cells of different types.")
+    (license license:expat)))
+
 (define-public r-methylkit
   (package
     (name "r-methylkit")

base-commit: 3578fb1323db3f0eadd5749e51095e5f196d78c7
-- 
2.38.1

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