Subject: bug#59567: closed ([PATCH] Add r-btools)

From: [email-masked] (GNU bug Tracking System)
Date: Fri, 25 Nov 2022 10:21:02 +0000

Your bug report

#59567: [PATCH] Added a new package, which is called r-btools. The package is a suite of R function for all types of microbial diversity analyses.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
59567: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=59567
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: [PATCH] Add r-btools
From: Ricardo Wurmus <[email-masked]>
To: [email-masked]
Date: Fri, 25 Nov 2022 11:19:24 +0100
List-Id: <debbugs-submit.debbugs.gnu.org>

Thanks for the patch!  I applied it with a few minor changes.  See
commit b095dac8e0aeb9a61ecffd53bfa6f60f49b31f54 for details.

-- 
Ricardo

Subject: [PATCH] Added a new package, which is called r-btools. The package is a suite of R function for all types of microbial diversity analyses.
From: Navid Afkhami <[email-masked]>
To: <[email-masked]>
Date: Fri, 25 Nov 2022 11:03:05 +0100
List-Id: <debbugs-submit.debbugs.gnu.org>

---
 gnu/packages/bioinformatics.scm | 36 +++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6d7097c42c..448d0689a4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -23,6 +23,7 @@
 ;;; Copyright © 2021 Hong Li <[email-masked]>
 ;;; Copyright © 2021, 2022 Simon Tournier <[email-masked]>
 ;;; Copyright © 2021 Felix Gruber <[email-masked]>
+;;; Copyright © 2022 Navid Afkhami <[email-masked]>	
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -535,6 +536,41 @@ (define-public pbcopper
 and utilities for PacBio C++ applications.")
       (license license:bsd-3))))
 
+(define-public r-btools
+  (let ((commit "fa21d4ca01d37ea4d98b45582453f3bf95cbc2b5")
+        (revision "1"))
+    (package
+      (name "r-btools")
+      (version (git-version "0.0.1" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/twbattaglia/btools")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0bca593dnxz6xdywpdi0ipli0paln2b3bfxxj0csnmj55ryrz428"))))
+      (properties `((upstream-name . "btools")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-biomformat
+                               r-coin
+                               r-deseq2
+                               r-dplyr
+                               r-genefilter
+                               r-phyloseq
+                               r-picante
+                               r-plotly
+                               r-reshape2
+                               r-stringr
+                               r-vegan))
+      (home-page "https://github.com/twbattaglia/btools")
+      (synopsis "R functiones for microbial diversity analyses")
+      (description
+       "An assortment of R functions that ist suitable
+for all types of microbial diversity analyses")
+      (license license:expat))))
+
 (define-public pbbam
   (package
     (name "pbbam")
-- 
2.34.1