From debbugs-submit-bounces@debbugs.gnu.org Fri Nov 25 05:03:44 2022 Received: (at submit) by debbugs.gnu.org; 25 Nov 2022 10:03:44 +0000 Received: from localhost ([127.0.0.1]:33569 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oyVYe-00047i-Ft for submit@debbugs.gnu.org; Fri, 25 Nov 2022 05:03:44 -0500 Received: from lists.gnu.org ([209.51.188.17]:45810) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oyVYc-00047Z-8T for submit@debbugs.gnu.org; Fri, 25 Nov 2022 05:03:43 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oyVYY-0003Lr-M0 for guix-patches@gnu.org; Fri, 25 Nov 2022 05:03:40 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oyVYO-0004yC-KP for guix-patches@gnu.org; Fri, 25 Nov 2022 05:03:32 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-transfer-encoding:content-type:content-type:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1669370600; x=1671185001; bh=mxUjy4ayJhHxpsP aMQT0/QllP+N6RcOA8W+NKYGwaMo=; b=B+DV7/LOgyspR7nhtQ+QCnNpnlV/2Wu 2ByxPJmUtBu39erbVwEQakr2kil7esY7oKf4JWVRqqeeNnI7uP0ErJHqtBgDpNOk WdFOQY+QOQyZGciampe8UDufEN6FyHHFiSrZHuX/wqmMUYMAmKkfb88cewXwtoSq r2fPjQBkFKi0= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 409573001CD for ; Fri, 25 Nov 2022 11:03:20 +0100 (CET) Received: from localhost.localdomain (89.247.175.75) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.16; Fri, 25 Nov 2022 11:03:17 +0100 From: Navid Afkhami To: Subject: [PATCH] Added a new package, which is called r-btools. The package is a suite of R function for all types of microbial diversity analyses. Date: Fri, 25 Nov 2022 11:03:05 +0100 Message-ID: <20221125100305.25836-1-navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 8bit X-Originating-IP: [89.247.175.75] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27284.007 X-TM-AS-Result: No-10--4.667400-5.000000 X-TMASE-MatchedRID: Ebyn40Y01iF6fjezFKxXHE7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOJWs 9XYyBIVFc91aTuTWMRE65t7HvMis8MQeIOzgVmNsULGoTjCGdeUL//VMxXlyE8gVyTd/p+/I4dc Lq1GTrXXdTAmCcpzVLpHUVpTT9o/NRrppn372ENdFdmLrX42PXErYcW9c3HAUU72YOAMDJjieAi CmPx4NwHJnzNw42kCxxEHRux+uk8jfhP1xgyx3DDJXU60gOOQGchICEEs10Ix3ENsx5gGeh/mDx F16jOzM1dCTxTBibdYEaRmO7N2i5FNOongVmZsSpSD4nIcXX6w/0YlpNJ7o8dxSR7be7fnTFTs4 ljtt094P2K/+wkyxVzs7KL+6XFB4pSBl0hpeDh8= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.667400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27284.007 X-TM-SNTS-SMTP: 314DBEE31D5AB9D3D43201222CFC37426277934D79876E29EC14A70A9487A1DC2002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) --- gnu/packages/bioinformatics.scm | 36 +++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6d7097c42c..448d0689a4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -23,6 +23,7 @@ ;;; Copyright © 2021 Hong Li ;;; Copyright © 2021, 2022 Simon Tournier ;;; Copyright © 2021 Felix Gruber +;;; Copyright © 2022 Navid Afkhami ;;; ;;; This file is part of GNU Guix. ;;; @@ -535,6 +536,41 @@ (define-public pbcopper and utilities for PacBio C++ applications.") (license license:bsd-3)))) +(define-public r-btools + (let ((commit "fa21d4ca01d37ea4d98b45582453f3bf95cbc2b5") + (revision "1")) + (package + (name "r-btools") + (version (git-version "0.0.1" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/twbattaglia/btools") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0bca593dnxz6xdywpdi0ipli0paln2b3bfxxj0csnmj55ryrz428")))) + (properties `((upstream-name . "btools"))) + (build-system r-build-system) + (propagated-inputs (list r-biomformat + r-coin + r-deseq2 + r-dplyr + r-genefilter + r-phyloseq + r-picante + r-plotly + r-reshape2 + r-stringr + r-vegan)) + (home-page "https://github.com/twbattaglia/btools") + (synopsis "R functiones for microbial diversity analyses") + (description + "An assortment of R functions that ist suitable +for all types of microbial diversity analyses") + (license license:expat)))) + (define-public pbbam (package (name "pbbam") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Nov 25 05:20:50 2022 Received: (at 59567-done) by debbugs.gnu.org; 25 Nov 2022 10:20:50 +0000 Received: from localhost ([127.0.0.1]:33619 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oyVpC-0004YO-Je for submit@debbugs.gnu.org; Fri, 25 Nov 2022 05:20:50 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21106) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oyVp9-0004YE-7e for 59567-done@debbugs.gnu.org; Fri, 25 Nov 2022 05:20:49 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1669371645; cv=none; d=zohomail.com; s=zohoarc; b=IIQPyqzupb9dFcgo8uJO9/3xwjP1mgSiDMmDB6/a8XXUT/A12KP/yJckCtNzgRd/uqmk5Uiear8OoULxwDj8WCK2j4HrY+gQjxbdE/ZdLHhu/IijJ3llg51WTSahJh4vZYinvWE5hRUQamLg/WhtqacvC6JaZYP6sLRmYD3XNsw= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1669371645; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=wgL/whLy2BrqcHv6V8iEAbKQqdu8fx9fq/rc44LboDE=; b=CznXQX4AK4zmg1UHOMTG/t7xtkMsbKfrxx1kxH2MatRBeF8taRt/CVtNj65tm7Qpbwv9kCFFroN1UGy14N+TJ4eW2KfNDk8KuBdSuC8VGaCq5rsctNpNfBBfIgoOUkk0a4Q6PGZJynq3tW5CBNgoWxDuNzA7hc/MeBsiY7NTt14= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1669371645; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=wgL/whLy2BrqcHv6V8iEAbKQqdu8fx9fq/rc44LboDE=; b=BNQVSKCb6mg7KZTnQsu1o2TocXwHRh4ppgEffds7PsHwwPWIs93O6A9y+OgQUsKc XG+mRgl6U84EhfLuSh0Qv4WWNSlzJ44bSi1n9UEx7chl2qdI8t7CaVSN3zOLopctcs8 weQWB9uI4dH1sFr6ch+17yhox1sB9MT8kZY3oAto= Received: from localhost (145-109-142-46.pool.kielnet.net [46.142.109.145]) by mx.zohomail.com with SMTPS id 1669371643664165.28960493148315; Fri, 25 Nov 2022 02:20:43 -0800 (PST) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 59567-done@debbugs.gnu.org Subject: [PATCH] Add r-btools Date: Fri, 25 Nov 2022 11:19:24 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87a64fmj2f.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 59567-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patch! I applied it with a few minor changes. See commit b095dac8e0aeb9a61ecffd53bfa6f60f49b31f54 for details. -- Ricardo From unknown Sun Aug 17 22:05:20 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 23 Dec 2022 12:24:19 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator