From debbugs-submit-bounces@debbugs.gnu.org Tue Nov 08 22:10:21 2022 Received: (at submit) by debbugs.gnu.org; 9 Nov 2022 03:10:21 +0000 Received: from localhost ([127.0.0.1]:38547 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbTo-0003ZX-Q5 for submit@debbugs.gnu.org; Tue, 08 Nov 2022 22:10:21 -0500 Received: from lists.gnu.org ([209.51.188.17]:47284) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbTm-0003ZO-FR for submit@debbugs.gnu.org; Tue, 08 Nov 2022 22:10:19 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1osbTm-0007Zj-7x for guix-patches@gnu.org; Tue, 08 Nov 2022 22:10:18 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1osbTk-0004XF-4X for guix-patches@gnu.org; Tue, 08 Nov 2022 22:10:18 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= mime-version:content-type:content-type:content-language :accept-language:message-id:date:date:subject:subject:from:from :received:received; s=mdc; t=1667963395; x=1669777796; bh=1zehll utXPDmPnge53cpi2o2ExWzR8KzgVa0L4QmxRo=; b=Cf6Yz/bIX7O00dZEfP0wQM M1oYIdWv2zICHnbtMD+l8dL27ZiQI/goXOznc6NcFAkmLYnnfSUVJ33Gp0TexNwm 5zN2R1BNKsHUrfBhCYzFv2EUFFr/bWps/d0Yj9cYT1l7LCY9C7Ucu55NfDCfD5V4 /bw9e+IE2+olDwg2Q6FKA= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id ABA42A01E6 for ; Wed, 9 Nov 2022 04:09:55 +0100 (CET) Received: from SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Wed, 9 Nov 2022 04:09:54 +0100 Received: from SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a]) by SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a%2]) with mapi id 15.01.2507.013; Wed, 9 Nov 2022 04:09:54 +0100 From: "MadalinIonel.Patrascu@mdc-berlin.de" To: "guix-patches@gnu.org" Subject: [PATCH] gnu: Add r-pals, r-glmnetutils and r-pando. Thread-Topic: [PATCH] gnu: Add r-pals, r-glmnetutils and r-pando. Thread-Index: AQHY8+iBhjD280Z3lUC/CXuM2geyiw== Date: Wed, 9 Nov 2022 03:09:54 +0000 Message-ID: <444bff8aed1f443896b5f3ced07297fa@mdc-berlin.de> Accept-Language: en-US, de-DE Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.51] x-tm-as-product-ver: SMEX-14.0.0.3092-9.0.1002-27252.004 x-tm-as-result: No-10--10.821600-5.000000 x-tmase-matchedrid: a3KJLn6RIiKfkHSWeTTytMG0UNgaZpYqGsvgUMYAn4UWzPTbxO7R+tIS YzBUt2RaXVsEWVqYqaivJcrLMYkA70UuXkWTSi/R30kDaWZBE1RU4sxFq6igEUqa6TyhyXvPanS BG22Md4kPwBO16/3EcPLhex7UcnSIOa9S1kbnyvQR3SGennXG6yUnLzk1+Ixz8SMjfUqlKmEiZK SDFh3GwkSstxDHEhaA6TFhv5qa3/SjxYyRBa/qJcaUO+wtQNbazTP5Udhleg/ohFM2bI/7a7oKX Xl56/22yYLWhgEI5mCYd35IeR/zBrvnx9chKYFz x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--10.821600-5.000000 x-tmase-version: SMEX-14.0.0.3092-9.0.1002-27252.004 x-tm-snts-smtp: 0C041E33DB5FC9A9D4E50C7D5CF2256E0875FB6E2868F193F529515768B13CDD2002:F Content-Type: multipart/alternative; boundary="_000_444bff8aed1f443896b5f3ced07297famdcberlinde_" MIME-Version: 1.0 Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, HTML_MESSAGE=0.001, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) --_000_444bff8aed1f443896b5f3ced07297famdcberlinde_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable * gnu/packages/bioinformatics.scm (r-pando): New variable. * gnu/packages/cran.scm (r-glmnetutils and r-pals): New variables. --_000_444bff8aed1f443896b5f3ced07297famdcberlinde_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable

* gnu/packages/bioinformatics.scm (r-pando): New variable.<= br>

* gnu/packages/cran.scm (r-glmnetutils and r-pals): Ne= w variables.

--_000_444bff8aed1f443896b5f3ced07297famdcberlinde_-- From debbugs-submit-bounces@debbugs.gnu.org Tue Nov 08 22:15:58 2022 Received: (at 59142) by debbugs.gnu.org; 9 Nov 2022 03:15:59 +0000 Received: from localhost ([127.0.0.1]:38555 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZG-0003iH-G4 for submit@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:58 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:34167) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZE-0003hq-0i for 59142@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:56 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1667963748; x=1669778149; bh=EpVSrIdA7Xnx3+K kzJyIFhsYEXLFmXgSEKe0D77K3IY=; b=pwu+i/VVs//eoaz0uwbvB4iDftRSqKl EfZC5bWetrkDYBObiWZZC1cI3iV79M4HRIPwkTRhp9DZF4wZ6C791xBgdVh12eH2 gyBaKIIzZGK6kAH9N969mIYYU30+UjccEilOkHHx5y+FjUfmana1I85AV71fXsL7 ZNuPX1gbYbfo= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id EBEBB3002E7 for <59142@debbugs.gnu.org>; Wed, 9 Nov 2022 04:15:47 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Wed, 9 Nov 2022 04:15:47 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <59142@debbugs.gnu.org> Subject: [PATCH 1/3] gnu: Add r-pals. Date: Wed, 9 Nov 2022 04:13:29 +0100 Message-ID: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-AS-Result: No-10--6.447900-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEIjG wx10ej9iRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v9y4VFP6muDhpbI+L60qto8qbs +nJ/tFJH53MzgUtcaKq6C7GFhIb12Wi8Qip68NgfdCok3ibXlQeuLFZZYlisfHxPMjOKY7A+u65 UDD0aDgsRB0bsfrpPI8edcQ1uyNCKU7rL13kdicOiCVmXS0Cy1pLSB495GUm0toIc8cvFbWVAnq 6B0t8JQ X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.447900-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-SNTS-SMTP: 85A98B88D895477CDF919FD54D7BBFFDA99683CD056B242A8F57E0E048EE667E2002:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 59142 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-pals): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index eff789ba8d..7f5ad1faf3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1661,6 +1661,31 @@ (define-public r-pacman functions which can speed up workflow.") (license license:gpl2))) +(define-public r-pals + (package + (name "r-pals") + (version "1.7") + (source (origin + (method url-fetch) + (uri (cran-uri "pals" version)) + (sha256 + (base32 + "18pbivmqs9yqsb6p8anv42alny0njaq3dajibhzysax0b7rsk2js")))) + (properties `((upstream-name . "pals"))) + (build-system r-build-system) + (propagated-inputs + (list r-colorspace + r-dichromat + r-mapproj + r-maps)) + (native-inputs (list r-knitr)) + (home-page "https://kwstat.github.io/pals/") + (synopsis "Color palettes, color maps, and tools to evaluate them") + (description + "This package provides a comprehensive collection of color palettes, color +maps, and tools to evaluate them.") + (license license:gpl3))) + (define-public r-paralleldist (package (name "r-paralleldist") base-commit: 7de6aa8a0abdb54727e1dd8f775802284b99e707 -- 2.38.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Nov 08 22:15:59 2022 Received: (at 59142) by debbugs.gnu.org; 9 Nov 2022 03:15:59 +0000 Received: from localhost ([127.0.0.1]:38557 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZG-0003iJ-Qq for submit@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:59 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:55629) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZE-0003ht-Dr for 59142@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:57 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1667963750; x=1669778151; bh=anjMT2uJS+WEFHudVpJj+BKpuH9h5uRYfz28tCYjNMw=; b=OxylJ51RqnZV m+rZ4UDb3rWYHoJCsQRa8/iHvSi1Zc0cgnbNxvIYhUDjuxnOY3yOESHnS3rBCZ1y pUtaWFzqmDYMA1wprM9rtQcgsOPtrTMAV8Vh0CX62F7SYLLmu7/qqNMEuQ+asTbx yKCoyF8d6z4FTDH6osXA89W+fPkXov8= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 6390E3002F9 for <59142@debbugs.gnu.org>; Wed, 9 Nov 2022 04:15:50 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Wed, 9 Nov 2022 04:15:47 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <59142@debbugs.gnu.org> Subject: [PATCH 3/3] gnu: Add r-pando. Date: Wed, 9 Nov 2022 04:13:31 +0100 Message-ID: <20221109031331.12487-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> References: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-AS-Result: No-10--2.888400-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXR6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VIPc XuILVCbaRRa406V/YwyBUGewL2YXt10ieHN50/kHxi///JpaHQPF0kjYVlocoaY5ZGw7wyeHJ41 MkTChJC8DLGsLUNXmfO8EXzJfARL10N7DjAdxZNTi8zVgXoAltsIJ+4gwXrEtwrbXMGDYqV8Nst CXmf87HDoiWn+wq+fRoqhRhbf+cgE03S4XUEEM6phzJoZhXcxtnGYcDbn9w8JvQYMNbeLziMwI0 w+ZP4PnohN7csIcnoZ5tgTrUUdLhChCDgyssE8uo3yYJV8x0OrMUVc0s17dsX/q4TD2v7K1 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.888400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-SNTS-SMTP: 24AB6D0D09AC873044737685804912D8C8F0E2124D4E3172EF5FA26B29974BC22002:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 59142 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/bioinformatics.scm (r-pando): New variable. --- gnu/packages/bioinformatics.scm | 50 +++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 47f5574eeb..87c93bab4d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7600,6 +7600,56 @@ (define-public r-chromunity Pore-C concatemers.") (license license:gpl3)))) +(define-public r-pando + (package + (name "r-pando") + (version "1.0.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/quadbiolab/Pando") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0c83anzdrbvg47p9xns2bxpjlx5z328can3jmzilw6rygwp7hyii")))) + (properties `((upstream-name . "Pando"))) + (build-system r-build-system) + (propagated-inputs + (list r-bayestestr + r-brms + r-foreach + r-genomicranges + r-ggplot2 + r-ggpointdensity + r-ggraph + r-glmnetutils + r-iranges + r-irlba + r-matrix + r-motifmatchr + r-pals + r-patchwork + r-seurat + r-signac + r-sparsematrixstats + r-tfbstools + r-tidygraph + r-tidyverse + r-uwot + r-xgboost)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/quadbiolab/Pando") + (synopsis + "Inferring regulomes from multi-modal single-cell genomics data") + (description + "@code{Pando} leverages multi-modal single-cell measurements to infer gene +regulatory networks using a flexible linear model-based framework. By modeling +the relationship between TF-binding site pairs with the expression of target +genes, @code{Pando} simultaneously infers gene modules and sets of regulatory +regions for each transcription factor.") + (license license:expat))) + (define-public r-presto (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad") (revision "0")) -- 2.38.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Nov 08 22:15:59 2022 Received: (at 59142) by debbugs.gnu.org; 9 Nov 2022 03:15:59 +0000 Received: from localhost ([127.0.0.1]:38559 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZH-0003iQ-Ar for submit@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:59 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:46291) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osbZE-0003hs-0j for 59142@debbugs.gnu.org; Tue, 08 Nov 2022 22:15:57 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-transfer-encoding:content-type:content-type:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1667963749; x=1669778150; bh=o5jgSA22ODHvmb+sacIRZNpfd3S6mnjyj7e/XbP0qTE=; b=ChJlsdLwky4h r2FpFrmR5LI0GynnRQ3WFCK42wbq4CBgYSlxfqtEWKni6LH+gYVIdKu6Rpdifonm iw5YT/UmGvH1chKjI7iogPOGA/aF7+Hh9rXEOqCSbUKj0LdIH3EUa+yD0hxoJOQT o9RcqydGWOpd0ibTlctit+Ky6ydE4vM= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id ADF343002F6 for <59142@debbugs.gnu.org>; Wed, 9 Nov 2022 04:15:49 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.13; Wed, 9 Nov 2022 04:15:47 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <59142@debbugs.gnu.org> Subject: [PATCH 2/3] gnu: Add r-glmnetutils. Date: Wed, 9 Nov 2022 04:13:30 +0100 Message-ID: <20221109031331.12487-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> References: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 8bit X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-AS-Result: No-10--3.513200-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkELq6 6d0Fv4eURRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v9lRzZAkKRGDaY5ZGw7wyeHY87 NwWBxSvgXwJ4mjy7A0C1h1eUc+p680N7DjAdxZNTnzlXMYw4XMDzvSj1BF/M7C24oEZ6SpSk6XE E7Yhw4FidD+Qh6/9mj8pj38OI8mS+zdLSFcIdv2EQsFI7I8I3USbKhk5JQoIWSw5kZBi2Q6CWZs K6jmTWf5WnGuUSFr/kKveF4MHtyRt8iatREjfpDE8nb9DwdQ4C2jbSab1pg0UjxFpwn53SOfhj5 CZkmSyI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.513200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27252.004 X-TM-SNTS-SMTP: E3C45FC3FE3ADB4AA82898D2EFEC06794686D213FEE35A09570F5A1DD642C53E2002:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 59142 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-glmnetutils): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7f5ad1faf3..71843a8cb6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4153,6 +4153,32 @@ (define-public r-glue Docstrings (PEP-0257) and Julia's Triple-Quoted String Literals.") (license license:expat))) +(define-public r-glmnetutils + (package + (name "r-glmnetutils") + (version "1.1.8") + (source (origin + (method url-fetch) + (uri (cran-uri "glmnetUtils" version)) + (sha256 + (base32 + "1k8ivzjgpkm2a948qxx3wmkhlppbk31qc76spv2pscmp24x0lxyn")))) + (properties `((upstream-name . "glmnetUtils"))) + (build-system r-build-system) + (propagated-inputs + (list r-glmnet + r-matrix)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/hongooi73/glmnetUtils") + (synopsis + "Streamline the process of fitting elastic net models with glmnet") + (description + "This package provides a collection of tools to streamline the process of +fitting elastic net models with @code{glmnet}. In addition to providing a formula +interface, it also features a function @code{cva.glmnet} to do crossvalidation +for both α and λ, as well as some utility functions.") + (license license:gpl2))) + (define-public r-paletteer (package (name "r-paletteer") -- 2.38.1 From debbugs-submit-bounces@debbugs.gnu.org Wed Nov 09 04:07:33 2022 Received: (at 59142-done) by debbugs.gnu.org; 9 Nov 2022 09:07:33 +0000 Received: from localhost ([127.0.0.1]:39038 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osh3V-0000Sw-0W for submit@debbugs.gnu.org; Wed, 09 Nov 2022 04:07:33 -0500 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21026) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1osh3Q-0000Sj-KG for 59142-done@debbugs.gnu.org; Wed, 09 Nov 2022 04:07:30 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1667984844; cv=none; d=zohomail.com; s=zohoarc; b=Vsw19oBfISfkZf1A71FH9H7xKj2Mvp6L09IV7iMW82cFIsqAorJvEujnhkplSH6BUwmcv15w0v7vtrVYSfKvrtnoG0/PFYtnRlmbyIq6AfBp79fbDNWKJPylRuSyluX9Gcm6r/5IsSWakKeEeOE+Kw/BTkBHCBcTx+B6wFLY+to= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1667984844; h=Content-Type:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=M9OZKLRrlQwtt0hCfm1HKoWP4F074PUnNGPFEkQu9g4=; b=QLUjM4FnkPzuQxeUEdvSwMgLsXZ0XZANVXZBhafDkYj2stAz1PZibeI6RDPEWYq5g08a2Dbuuifi7Wxpp6KAOseLiXGFXGQ80cooac+fFhQHen5iSUGSkdXV3GfLyP13OthvfVyI0aamJtA6gI0ONGZmU118Iy3ppayp4jZC5VA= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1667984844; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To; bh=M9OZKLRrlQwtt0hCfm1HKoWP4F074PUnNGPFEkQu9g4=; b=IdcA2ZL0xdOvFCFfjWLqOFjafG28GNL3c9f88K+WAWJ74jK/XbtTG8BaulJ2Lm4R BhMI3xXmlwWshuo9hv8UFe6kAQ1RZD4OSPkMPfERxJwY+Tk91PDtKg6rgd8ox8vWGKB wiZF0gz8k4ge3qLU9qfz3aswi4JIMYyt8RyAGRDA= Received: from localhost (i5E862DA7.versanet.de [94.134.45.167]) by mx.zohomail.com with SMTPS id 166798484299984.1370779726418; Wed, 9 Nov 2022 01:07:22 -0800 (PST) References: <444bff8aed1f443896b5f3ced07297fa@mdc-berlin.de> <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#59142] [PATCH 1/3] gnu: Add r-pals. Date: Wed, 09 Nov 2022 10:06:55 +0100 In-reply-to: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87iljo3393.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 59142-done Cc: 59142-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) I applied this series with minor indentation changes. Thank you! -- Ricardo From unknown Tue Jun 17 01:49:22 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Wed, 07 Dec 2022 12:24:08 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator