GNU bug report logs - #58523
[PATCH] gnu: Add r-macrophage.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#58523: closed ([PATCH] gnu: Add r-macrophage.)
Date: Sat, 15 Oct 2022 21:24:01 +0000

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Your message dated Sat, 15 Oct 2022 23:23:07 +0200
with message-id <875ygkg4s2.fsf <at> elephly.net>
and subject line Re: [bug#58523] [PATCH] gnu: Add r-macrophage.
has caused the debbugs.gnu.org bug report #58523,
regarding [PATCH] gnu: Add r-macrophage.
to be marked as done.

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help-debbugs <at> gnu.org.)


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58523: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=58523
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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-macrophage.
Date: Fri, 14 Oct 2022 19:27:28 +0200

X-Debbugs-Cc: rekado <at> elephly.net

* gnu/packages/bioconductor.scm (r-macrophage): New variable.
---
 gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ecb60f2e24..3692bb94af 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1384,6 +1384,29 @@ (define-public r-genomationdata
 downloaded from Encode.")
     (license license:gpl3+)))
 
+(define-public r-macrophage
+  (package
+    (name "r-macrophage")
+    (version "1.12.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "macrophage" version
+                                     'experiment))
+              (sha256
+               (base32
+                "0ml8v92w021fmzsn4yl90ap3l4l3b9c1pk8pzsrm122p82wzlyms"))))
+    (properties `((upstream-name . "macrophage")))
+    (build-system r-build-system)
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/macrophage")
+    (synopsis "Human macrophage immune response data")
+    (description
+     "This package provides the output of running @code{Salmon} on a set of 24
+RNA-seq samples from Alasoo, et al. \"Shared genetic effects on chromatin and
+gene expression indicate a role for enhancer priming in immune response\", published
+in Nature Genetics, January 2018.")
+    (license license:gpl2+)))
+
 (define-public r-msdata
   (package
     (name "r-msdata")

base-commit: 10d429f2fce321d8285684503094694ec3979865
-- 
2.37.3

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 58523-done <at> debbugs.gnu.org
Subject: Re: [bug#58523] [PATCH] gnu: Add r-macrophage.
Date: Sat, 15 Oct 2022 23:23:07 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> X-Debbugs-Cc: rekado <at> elephly.net
>
> * gnu/packages/bioconductor.scm (r-macrophage): New variable.

Applied, thanks!

-- 
Ricardo

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