Subject: bug#57679: closed ([RFC PATCH] gnu: Add paraview.)

From: [email-masked] (GNU bug Tracking System)
Date: Wed, 28 Dec 2022 15:40:01 +0000

Your bug report

#57679: [RFC PATCH] gnu: Add paraview.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
57679: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=57679
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: [RFC PATCH] gnu: Add paraview.
From: Ricardo Wurmus <[email-masked]>
To: [email-masked]
Date: Wed, 28 Dec 2022 16:37:14 +0100
List-Id: <debbugs-submit.debbugs.gnu.org>

I updated paraview from the release candidate to the release, used the
qt-build-system (which solves the problem with icons), moved it from
graphics to image-processing where I had previously added the other
variant of paraview and pushed it with commit
fc5dc3e04789a15d80a7b35987adaefc1a94b97c.

Thanks!

-- 
Ricardo

Subject: [RFC PATCH] gnu: Add paraview.
From: "Paul A. Patience" <[email-masked]>
To: [email-masked]
Cc: [email-masked], [email-masked]
Date: Thu, 08 Sep 2022 15:24:06 +0000
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/graphics.scm (paraview): New variable.
---
Hi,

ParaView builds with this patch, but doesn't display icons for any of its
buttons, e.g., for open file, etc.
I have no idea how to fix this.
I started packaging ParaView last year but encountered this problem and gave
up on trying to fix it.
Yesterday I started updating (and cleaning up quite a bit) the package for the
latest release (candidate) of ParaView, and it's basically done except for the
missing icons.
I'm hoping someone has some ideas for making the icons appear (Maxim, maybe?).

Thanks,
Paul

 gnu/packages/graphics.scm | 283 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 283 insertions(+)

diff --git a/gnu/packages/graphics.scm b/gnu/packages/graphics.scm
index fe38e7d03f..7a962afb3d 100644
--- a/gnu/packages/graphics.scm
+++ b/gnu/packages/graphics.scm
@@ -63,12 +63,16 @@ (define-module (gnu packages graphics)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages cpp)
   #:use-module (gnu packages crypto)
+  #:use-module (gnu packages curl)
   #:use-module (gnu packages datastructures)
   #:use-module (gnu packages documentation)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages fonts)
   #:use-module (gnu packages fontutils)
   #:use-module (gnu packages freedesktop)
+  #:use-module (gnu packages game-development)
+  #:use-module (gnu packages gcc)
+  #:use-module (gnu packages geo)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages ghostscript)
   #:use-module (gnu packages gl)
@@ -92,6 +96,7 @@ (define-module (gnu packages graphics)
   #:use-module (gnu packages man)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages mp3)
+  #:use-module (gnu packages mpi)
   #:use-module (gnu packages multiprecision)
   #:use-module (gnu packages ninja)
   #:use-module (gnu packages pciutils)
@@ -101,18 +106,23 @@ (define-module (gnu packages graphics)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages plotutils)
   #:use-module (gnu packages pretty-print)
+  #:use-module (gnu packages protobuf)
   #:use-module (gnu packages pth)
   #:use-module (gnu packages pulseaudio)  ; libsndfile, libsamplerate
   #:use-module (gnu packages python)
   #:use-module (gnu packages python-build)
+  #:use-module (gnu packages python-science)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages qt)
   #:use-module (gnu packages readline)
   #:use-module (gnu packages sdl)
   #:use-module (gnu packages serialization)
+  #:use-module (gnu packages sphinx)
+  #:use-module (gnu packages sqlite)
   #:use-module (gnu packages stb)
   #:use-module (gnu packages swig)
   #:use-module (gnu packages tbb)
+  #:use-module (gnu packages textutils)
   #:use-module (gnu packages toolkits)
   #:use-module (gnu packages upnp)
   #:use-module (gnu packages video)
@@ -2392,3 +2402,276 @@ (define-public f3d
 glTF, STL, STEP, PLY, OBJ, FBX), and provides numerous rendering and texturing
 options.")
     (license license:bsd-3)))
+
+(define-public paraview
+  (package
+    (name "paraview")
+    (version "5.11.0-RC1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://gitlab.kitware.com/paraview/paraview.git")
+             (commit (string-append "v" version))
+             (recursive? #t)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0yhsavi1c9xzk8va81pnl523i68br39ngidlvfjjnk8dhpm3dzbg"))
+       (modules '((guix build utils)))
+       (snippet
+        ;; TODO: Also remove unused bundled libraries and plugins?
+        #~(begin
+            ;; Remove bundled ParaView libraries which are available in Guix
+            ;; or undesired.
+            (for-each (lambda (dir)
+                        (delete-file-recursively
+                         (string-append "ThirdParty/" dir "/vtk"
+                                        (string-downcase dir))))
+                      '(;;"CosmoHaloFinder"
+                        ;;"IceT"
+                        "NvPipe"        ; Don't want NvPipe support
+                        ;;"QtTesting"
+                        ;;"cinema"
+                        ;;"cinemasci"
+                        "protobuf"))
+            ;; Remove undesired ParaView plugins.
+            (delete-file-recursively "Plugins/pvNVIDIAIndeX")
+            ;; Remove bundled VTK libraries which are available in Guix.
+            (for-each (lambda (dir)
+                        (delete-file-recursively
+                         (string-append "VTK/ThirdParty/" dir "/vtk" dir)))
+                      '(;;"cgns"
+                        "cli11"
+                        ;;"diy2"
+                        "doubleconversion"
+                        "eigen"
+                        ;;"exodusII"
+                        "expat"
+                        ;;"exprtk"
+                        ;;"fides"
+                        "fmt"
+                        "freetype"
+                        "gl2ps"
+                        "glew"
+                        ;;"h5part"
+                        "hdf5"
+                        ;;"ioss"
+                        "jpeg"
+                        "jsoncpp"
+                        ;;"kissfft"
+                        ;;"libharu" ; Requires some PRs applied to 2.3.0
+                        "libproj"
+                        "libxml2"
+                        ;;"loguru"
+                        "lz4"
+                        "lzma"
+                        "mpi4py"
+                        "netcdf"
+                        ;;"nlohmannjson" ; ParFlow build fails even with bundled
+                        "ogg"
+                        ;;"pegtl"
+                        "png"
+                        "pugixml"
+                        "sqlite"
+                        "theora"
+                        "tiff"
+                        "utf8"
+                        ;;"verdict"
+                        ;;"vpic"
+                        ;;"vtkm"
+                        ;;"xdmf2"
+                        ;;"xdmf3"
+                        ;;"zfp"
+                        "zlib"))))))
+    (build-system cmake-build-system)
+    (arguments
+     (list #:build-type "Release"       ; 542 MiB in release mode
+           #:tests? #f                  ; Downloads test data
+           #:configure-flags
+           #~(let ((doc (string-append #$output "/share/doc/" #$name "-" #$version)))
+               (list
+                (string-append "-DCMAKE_INSTALL_DOCDIR=" doc) ; For paraview.qch
+
+                ;; ParaView build options
+                "-DPARAVIEW_BUILD_DEVELOPER_DOCUMENTATION=ON"
+                (string-append "-DPARAVIEW_GENERATED_DOCUMENTATION_OUTPUT_DIRECTORY=" doc)
+
+                ;; ParaView capability options
+                ;;"-DPARAVIEW_USE_EXTERNAL_VTK=ON" ; Unsupported by ParaView
+                "-DPARAVIEW_USE_MPI=ON"
+                "-DPARAVIEW_USE_PYTHON=ON"
+                "-DPARAVIEW_USE_QTWEBENGINE=ON"
+
+                ;; ParaView features
+                ;;
+                ;; Enable those that are disabled by default.
+                ;; Commented means the dependencies are missing from Guix
+                ;; (or are otherwise described).
+                ;;"-DPARAVIEW_ENABLE_ADIOS2=ON"
+                ;;"-DPARAVIEW_ENABLE_COSMOTOOLS=ON"
+                ;;"-DPARAVIEW_ENABLE_CATALYST=ON"
+                "-DPARAVIEW_ENABLE_FFMPEG=ON"
+                ;;"-DPARAVIEW_ENABLE_FIDES=ON"
+                "-DPARAVIEW_ENABLE_GDAL=ON"
+                ;;"-DPARAVIEW_ENABLE_LAS=ON"
+                ;;"-DPARAVIEW_ENABLE_LOOKINGGLASS=ON" ; Downloads dependency
+                ;;"-DPARAVIEW_ENABLE_MOMENTINVARIANTS=ON" ; Downloads dependency
+                "-DPARAVIEW_ENABLE_MOTIONFX=ON"
+                ;;"-DPARAVIEW_ENABLE_OPENTURNS=ON"
+                ;;"-DPARAVIEW_ENABLE_OPENVDB=ON" ; Dependency not found
+                ;;"-DPARAVIEW_ENABLE_PDAL=ON"
+                ;;"-DPARAVIEW_ENABLE_RAYTRACING=ON"
+                "-DPARAVIEW_ENABLE_VISITBRIDGE=ON"
+                "-DPARAVIEW_ENABLE_XDMF3=ON"
+
+                ;; ParaView miscellaneous options
+                ;;
+                ;; Without -DPARAVIEW_DATA_EXCLUDE_FROM_ALL=OFF, test data is
+                ;; downloaded even with tests disabled.
+                "-DPARAVIEW_VERSIONED_INSTALL=OFF"
+                "-DPARAVIEW_DATA_EXCLUDE_FROM_ALL=OFF"
+
+                ;; ParaView plugins
+                ;;
+                ;; Enable those that are disabled by default.
+                ;; Commented means the dependencies are missing from Guix
+                ;; (or are otherwise described).
+                ;;"-DPARAVIEW_PLUGIN_ENABLE_AdiosReaderPixie=ON"
+                ;;"-DPARAVIEW_PLUGIN_ENABLE_AdiosReaderStaging=ON"
+                "-DPARAVIEW_PLUGIN_ENABLE_CAVEInteraction=ON"
+                ;;"-DPARAVIEW_PLUGIN_ENABLE_CDIReader=ON"
+                "-DPARAVIEW_PLUGIN_ENABLE_GeographicalMap=ON"
+                "-DPARAVIEW_PLUGIN_ENABLE_GmshIO=ON"
+                "-DPARAVIEW_PLUGIN_ENABLE_InSituExodus=ON"
+                ;;"-DPARAVIEW_PLUGIN_ENABLE_LookingGlass=ON"
+                "-DPARAVIEW_PLUGIN_ENABLE_NetCDFTimeAnnotationPlugin=ON"
+                ;;"-DPARAVIEW_PLUGIN_ENABLE_ParFlow=ON" ; Build fails
+                ;;"-DPARAVIEW_PLUGIN_ENABLE_PythonQtPlugin=ON"
+                "-DPARAVIEW_PLUGIN_ENABLE_SpaceMouseInteractor=ON"
+                ;;"-DPARAVIEW_PLUGIN_ENABLE_VDFReaderPlugin=ON"
+                ;;"-DPARAVIEW_PLUGIN_ENABLE_XRInterface=ON" ; Build fails
+                ;;"-DPARAVIEW_PLUGIN_ENABLE_zSpace=ON"
+
+                ;; VTK options
+                "-DVTK_SMP_IMPLEMENTATION_TYPE=TBB"
+                "-DVTKm_ENABLE_MPI=ON"
+
+                ;; External libraries for ParaView and VTK
+                "-DVTK_MODULE_USE_EXTERNAL_ParaView_protobuf=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_cli11=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_fmt=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_lzma=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_mpi4py=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON"
+                ;;"-DVTK_MODULE_USE_EXTERNAL_VTK_nlohmannjson=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON"
+                ;;"-DVTK_MODULE_USE_EXTERNAL_VTK_pegtl=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_pugixml=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_utf8=ON"
+                "-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON"))
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-after 'set-paths 'hide-gfortran
+                 (lambda _
+                   (setenv
+                    "CPLUS_INCLUDE_PATH"
+                    (string-join
+                     (delete (string-append #$(this-package-native-input
+                                               "gfortran")
+                                            "/include/c++")
+                             (string-split (getenv "CPLUS_INCLUDE_PATH") #\:))
+                     ":"))))
+               (replace 'install-license-files
+                 (lambda _
+                   (let ((src (string-append #$output "/share/licenses/ParaView"))
+                         (dst (string-append #$output "/share/doc/"
+                                             #$name "-" #$version "/licenses")))
+                     (copy-recursively src dst)
+                     (delete-file-recursively (dirname src))))))))
+    (native-inputs
+     (list gfortran
+           ;; For the documentation
+           doxygen
+           graphviz
+           perl
+           python-sphinx))
+    (inputs
+     (list boost
+           cli11
+           curl
+           double-conversion
+           eigen
+           expat
+           ffmpeg
+           fmt
+           freetype
+           gdal
+           gl2ps
+           glew
+           glu                  ; Propagated from glew, not strictly necessary
+           gmsh
+           hdf5
+           ;;json-modern-cxx              ; For ParFlow; build fails
+           jsoncpp
+           libjpeg-turbo
+           libogg
+           libpng
+           libtheora
+           libtiff
+           libx11              ; Propagated from libxt, not strictly necessary
+           libxcursor
+           libxml2
+           libxt
+           lz4
+           lzip
+           mesa
+           netcdf
+           openmpi
+           ;;openvdb                      ; For OpenVDB; dependency not found
+           ;;openvr                       ; For XRInterface; build fails
+           ;;pegtl                        ; For VTK; build fails
+           proj
+           protobuf
+           pugixml
+           python-cftime
+           python-matplotlib
+           python-mpi4py
+           python-numpy
+           python-wrapper
+           qtbase-5
+           qtdeclarative-5
+           qtmultimedia-5
+           qtsvg-5
+           qttools-5
+           qtwebchannel-5
+           qtwebengine-5
+           qtx11extras
+           qtxmlpatterns
+           sdl2
+           sqlite
+           tbb
+           utfcpp
+           xorgproto          ; Propagated from libx11, not strictly necessary
+           zlib))
+    (home-page "https://www.paraview.org/")
+    (synopsis "VTK-based, parallel data analyzer and visualizer")
+    (description "ParaView is a VTK-based, parallel data analyzer and
+visualizer which allows exploring data interactively in 3D or
+programmatically.")
+    (license license:bsd-3)))
--
2.37.3