GNU bug report logs - #57485
[PATCH] gnu: r-dyngen: Update to 1.0.4.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#57485: closed (Re: [bug#57485] [PATCH] gnu: r-dyngen: Update
 to 1.0.4.)
Date: Tue, 30 Aug 2022 21:07:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#57485: [PATCH] gnu: r-dyngen: Update to 1.0.4.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 57485 <at> debbugs.gnu.org.

-- 
57485: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=57485
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 57485-done <at> debbugs.gnu.org
Subject: Re: [bug#57485] [PATCH] gnu: r-dyngen: Update to 1.0.4.
Date: Tue, 30 Aug 2022 22:58:13 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioinformatics.scm (r-dyngnen): Update to 1.0.4.
> [source]: Change to cran-uri source.

Applied, thanks!

-- 
Ricardo

[Message part 3 (message/rfc822, inline)]

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: r-dyngen: Update to 1.0.4.
Date: Tue, 30 Aug 2022 12:44:31 +0200

* gnu/packages/bioinformatics.scm (r-dyngnen): Update to 1.0.4.
[source]: Change to cran-uri source.
---
 gnu/packages/bioinformatics.scm | 76 ++++++++++++++++-----------------
 1 file changed, 36 insertions(+), 40 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2bae609614..89e5dd645f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11592,47 +11592,43 @@ (define-public biobambam2
     (license license:gpl3+)))
 
 (define-public r-dyngen
-  (let ((commit "37fd1798fcbd41093fb3d7775bb2d268e2fc82b6")
-        (revision "1"))
-    (package
-      (name "r-dyngen")
-      (version (git-version "1.0.3" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/dynverse/dyngen")
-               (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "05pr6v1b8yji1jnj3fwx0crmg8ay6yy6lp9qjmcyvhkwbmf3kvc7"))))
-      (properties `((upstream-name . "dyngen")))
-      (build-system r-build-system)
-      (propagated-inputs
-       (list r-assertthat
-             r-dplyr
-             r-dynutils
-             r-ggplot2
-             r-ggraph
-             r-ggrepel
-             r-gillespiessa2
-             r-igraph
-             r-lmds
-             r-matrix
-             r-patchwork
-             r-pbapply
-             r-purrr
-             r-rlang
-             r-tibble
-             r-tidygraph
-             r-tidyr
-             r-viridis))
-      (home-page "https://github.com/dynverse/dyngen")
-      (synopsis "Multi-Modal simulator for single-cell omics analyses")
-      (description
-       "This package provides a multi-modal simulation engine for studying
+  (package
+    (name "r-dyngen")
+    (version "1.0.4")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "dyngen" version))
+       (sha256
+        (base32
+         "1qmqy0dyiz30zpf3ii4h2ip6hg2449ghb474sjzrqa1yk9mdpy4i"))))
+    (properties `((upstream-name . "dyngen")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-assertthat
+           r-dplyr
+           r-dynutils
+           r-ggplot2
+           r-ggraph
+           r-ggrepel
+           r-gillespiessa2
+           r-igraph
+           r-lmds
+           r-matrix
+           r-patchwork
+           r-pbapply
+           r-purrr
+           r-rlang
+           r-tibble
+           r-tidygraph
+           r-tidyr
+           r-viridis))
+    (home-page "https://github.com/dynverse/dyngen")
+    (synopsis "Multi-Modal simulator for single-cell omics analyses")
+    (description
+     "This package provides a multi-modal simulation engine for studying
 dynamic cellular processes at single-cell resolution.")
-      (license license:expat))))
+    (license license:expat)))
 
 ;; Needed for r-liana
 (define-public r-omnipathr/devel

base-commit: 47c11772dfe840a536ed7ec438fe832878f51054
-- 
2.37.2

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