From unknown Sun Jul 13 12:16:00 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#57485 <57485@debbugs.gnu.org> To: bug#57485 <57485@debbugs.gnu.org> Subject: Status: [PATCH] gnu: r-dyngen: Update to 1.0.4. Reply-To: bug#57485 <57485@debbugs.gnu.org> Date: Sun, 13 Jul 2025 19:16:00 +0000 retitle 57485 [PATCH] gnu: r-dyngen: Update to 1.0.4. reassign 57485 guix-patches submitter 57485 M=C4=83d=C4=83lin Ionel Patra=C8=99cu severity 57485 normal tag 57485 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Tue Aug 30 06:45:04 2022 Received: (at submit) by debbugs.gnu.org; 30 Aug 2022 10:45:04 +0000 Received: from localhost ([127.0.0.1]:34895 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oSyjv-00024i-IX for submit@debbugs.gnu.org; Tue, 30 Aug 2022 06:45:04 -0400 Received: from lists.gnu.org ([209.51.188.17]:45610) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oSyjs-0001z8-Dm for submit@debbugs.gnu.org; Tue, 30 Aug 2022 06:45:02 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:50906) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oSyjs-0004AM-8h for guix-patches@gnu.org; Tue, 30 Aug 2022 06:45:00 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:60221) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oSyjo-0007Zo-4M for guix-patches@gnu.org; Tue, 30 Aug 2022 06:44:58 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1661856282; x=1663670683; bh=buWAUR87CJNFbvO cuhecD4H+K4SQjJpmposPdrlKyRg=; b=JG25kUbmNzLFlCUwaakdzIL40eHXD6s 7KiPq28bTwFhzeVNsP6jG+KNe2OjI9mO0+vVUvRe4FDNI96bQTGwr7tnOynJoaUJ iHsULCflYf6tzYDCa/87RKQKNtFpbgFZlVoHDMMv/RBaf/MDr7D1R40ToaXJXudI E1+ZokJviVqw= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 957B5300339 for ; Tue, 30 Aug 2022 12:44:42 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.12; Tue, 30 Aug 2022 12:44:41 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: r-dyngen: Update to 1.0.4. Date: Tue, 30 Aug 2022 12:44:31 +0200 Message-ID: <20220830104431.23950-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.37.2 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27108.007 X-TM-AS-Result: No-10--8.285400-5.000000 X-TMASE-MatchedRID: p6FHQg4XS2/BP9kF6SLh5jiEPRj9j9rvwTlc9CcHMZerwqxtE531VICu qghmtWfXXt3JNptef3p4Zvg4N7yewr/NGs41mrZ7nVTWWiNp+v/F0kjYVlocoYnsfmkBGRXdP9s +bu07mxR7MSP7SLpuGD1q3kasL5FRhHW57gT4Ks0IoUOTWQl7EibH0QLHlTYFU72YOAMDJjieAi CmPx4NwJuJ+Pb8n/VxDV9TWrbbQmsqtq5d3cxkNZd/mwLf2BVUtKFbOGMNTtYaK+AwQTZFkDefN fm37jUcexR+z//2PjBoBmTSwRxjXg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--8.285400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27108.007 X-TM-SNTS-SMTP: F3F325D5C4BA9D79A911899E0D7810D948DD8A76493053D1A1224D46D75F09D12002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioinformatics.scm (r-dyngnen): Update to 1.0.4. [source]: Change to cran-uri source. --- gnu/packages/bioinformatics.scm | 76 ++++++++++++++++----------------- 1 file changed, 36 insertions(+), 40 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2bae609614..89e5dd645f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11592,47 +11592,43 @@ (define-public biobambam2 (license license:gpl3+))) (define-public r-dyngen - (let ((commit "37fd1798fcbd41093fb3d7775bb2d268e2fc82b6") - (revision "1")) - (package - (name "r-dyngen") - (version (git-version "1.0.3" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/dynverse/dyngen") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "05pr6v1b8yji1jnj3fwx0crmg8ay6yy6lp9qjmcyvhkwbmf3kvc7")))) - (properties `((upstream-name . "dyngen"))) - (build-system r-build-system) - (propagated-inputs - (list r-assertthat - r-dplyr - r-dynutils - r-ggplot2 - r-ggraph - r-ggrepel - r-gillespiessa2 - r-igraph - r-lmds - r-matrix - r-patchwork - r-pbapply - r-purrr - r-rlang - r-tibble - r-tidygraph - r-tidyr - r-viridis)) - (home-page "https://github.com/dynverse/dyngen") - (synopsis "Multi-Modal simulator for single-cell omics analyses") - (description - "This package provides a multi-modal simulation engine for studying + (package + (name "r-dyngen") + (version "1.0.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "dyngen" version)) + (sha256 + (base32 + "1qmqy0dyiz30zpf3ii4h2ip6hg2449ghb474sjzrqa1yk9mdpy4i")))) + (properties `((upstream-name . "dyngen"))) + (build-system r-build-system) + (propagated-inputs + (list r-assertthat + r-dplyr + r-dynutils + r-ggplot2 + r-ggraph + r-ggrepel + r-gillespiessa2 + r-igraph + r-lmds + r-matrix + r-patchwork + r-pbapply + r-purrr + r-rlang + r-tibble + r-tidygraph + r-tidyr + r-viridis)) + (home-page "https://github.com/dynverse/dyngen") + (synopsis "Multi-Modal simulator for single-cell omics analyses") + (description + "This package provides a multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution.") - (license license:expat)))) + (license license:expat))) ;; Needed for r-liana (define-public r-omnipathr/devel base-commit: 47c11772dfe840a536ed7ec438fe832878f51054 -- 2.37.2 From debbugs-submit-bounces@debbugs.gnu.org Tue Aug 30 17:06:35 2022 Received: (at 57485-done) by debbugs.gnu.org; 30 Aug 2022 21:06:36 +0000 Received: from localhost ([127.0.0.1]:37638 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oT8RK-0008W7-ER for submit@debbugs.gnu.org; Tue, 30 Aug 2022 17:06:35 -0400 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21022) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oT8R4-0008Vk-12 for 57485-done@debbugs.gnu.org; Tue, 30 Aug 2022 17:06:29 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1661893572; cv=none; d=zohomail.com; s=zohoarc; b=HtsOlREw3TeYxjmIhcxo1Emyx7thhzUIvaoExN5bSR3JbDuWF9MBz02dhrqrgtRiaeV/6wNlYL4pDSAXc5ALwYs8zD3EXAgDs3vs3nyIcQMHssRJgfn72IZ04oPChLXlcoLAEB661Dcu5dAKE2vUbwZmd2j3HyIs8OLdt0C+KRc= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1661893572; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=NfmfEI2NxeNbdJkHE+b8lL4qmXVGM0dXlZHhmjN2CZw=; b=L06k1icGaJTayVgps5rAYq13yNg4ED94Ug4udTkpKYntXUbLyGZKPJq7hpN0R0v9ZohPtnLDS4er30U4+mUX+8GGC/KrWCj2FlkrRpQvIobPfhUm/tFQCiAqG2mCZYtrrfQtsLCq7isdhgmx2nvfdCb1+hI0z5YnOEltTVUIjo4= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1661893572; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=NfmfEI2NxeNbdJkHE+b8lL4qmXVGM0dXlZHhmjN2CZw=; b=EFqFSRAjCKgKKaBYKNBOPx3hGu4UKllxG26fNlsLXesCtxrVTQqeIZl38FxPuuIm IJNJr1GcTSPyeuqqy8ewPAebZ5v8WBzVMialPPyG65KHRCWy18zh2ak4Xf8W+DxBaEJ NpH1P1auF2sEUjd8k1LjuOJJX0WALOe2CdbX7ibg= Received: from localhost (i5E862DB0.versanet.de [94.134.45.176]) by mx.zohomail.com with SMTPS id 1661893570346876.2013296690459; Tue, 30 Aug 2022 14:06:10 -0700 (PDT) References: <20220830104431.23950-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.8.7; emacs 28.1 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#57485] [PATCH] gnu: r-dyngen: Update to 1.0.4. Date: Tue, 30 Aug 2022 22:58:13 +0200 In-reply-to: <20220830104431.23950-1-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <874jxtv3uo.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 57485-done Cc: 57485-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/bioinformatics.scm (r-dyngnen): Update to 1.0.4. > [source]: Change to cran-uri source. Applied, thanks! --=20 Ricardo From unknown Sun Jul 13 12:16:00 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Wed, 28 Sep 2022 11:24:09 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator