From unknown Wed Aug 20 05:42:58 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#57415] [PATCH 2/2] gnu: snakemake-7: Convert dependencies to propagated-inputs Resent-From: Konrad Hinsen Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 25 Aug 2022 18:48:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 57415 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 57415@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.16614532601663 (code B ref -1); Thu, 25 Aug 2022 18:48:03 +0000 Received: (at submit) by debbugs.gnu.org; 25 Aug 2022 18:47:40 +0000 Received: from localhost ([127.0.0.1]:51281 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oRHtE-0000Ql-Jq for submit@debbugs.gnu.org; Thu, 25 Aug 2022 14:47:40 -0400 Received: from lists.gnu.org ([209.51.188.17]:46930) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oRHtC-0000QZ-DH for submit@debbugs.gnu.org; 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Thu, 25 Aug 2022 14:47:33 -0400 (EDT) From: Konrad Hinsen Date: Thu, 25 Aug 2022 20:47:32 +0200 Message-ID: MIME-Version: 1.0 Content-Type: text/plain Received-SPF: pass client-ip=66.111.4.25; envelope-from=konrad.hinsen@fastmail.net; helo=out1-smtp.messagingengine.com X-Spam_score_int: -27 X-Spam_score: -2.8 X-Spam_bar: -- X-Spam_report: (-2.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_LOW=-0.7, RCVD_IN_MSPIKE_H3=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.2 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) * gnu/packages/python-xyz.scm (snakemake-7): Ensure that "python -m snakemake" works (because snakemake uses it internally) --- gnu/packages/python-xyz.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 69e3b42927..31e13ad395 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -9803,7 +9803,7 @@ (define-public snakemake-7 ;; to the Google Storage service. (delete-file "tests/test_google_lifesciences.py") (invoke "pytest"))))))) - (inputs + (propagated-inputs (list python-appdirs python-configargparse python-connection-pool -- 2.37.1 From unknown Wed Aug 20 05:42:58 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Konrad Hinsen Subject: bug#57415: closed (Re: [bug#57415] [PATCH 2/2] gnu: snakemake-7: Convert dependencies to propagated-inputs) Message-ID: References: <87pmgjc9lf.fsf@gnu.org> X-Gnu-PR-Message: they-closed 57415 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 57415@debbugs.gnu.org Date: Mon, 29 Aug 2022 16:13:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1661789582-27962-1" This is a multi-part message in MIME format... ------------=_1661789582-27962-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #57415: [PATCH 2/2] gnu: snakemake-7: Convert dependencies to propagated-in= puts which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 57415@debbugs.gnu.org. --=20 57415: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D57415 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1661789582-27962-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 57415-done) by debbugs.gnu.org; 29 Aug 2022 16:12:37 +0000 Received: from localhost ([127.0.0.1]:33630 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oShNM-0007GP-NK for submit@debbugs.gnu.org; Mon, 29 Aug 2022 12:12:37 -0400 Received: from eggs.gnu.org ([209.51.188.92]:59632) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oShNL-0007GC-RY for 57415-done@debbugs.gnu.org; Mon, 29 Aug 2022 12:12:36 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:42214) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oShNG-0001Fz-Kw; Mon, 29 Aug 2022 12:12:30 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:Date:References:In-Reply-To:Subject:To: From; bh=7siu4+0/1Vq7630e0vD+8a5HbDwaRYtEE7jwfu9cirg=; b=W3xKa5kAHzLMdPOraDld R5JOfvqaDWtQ1FNXr+C8hHp42pSJ7QD22efbt1JdtCK3NGJjDmnGWwOsIuUPAZx5pumRmW4Kut21v /er1WGalAPjFtblNR8Y6l6OBrrq0Y9VqN5/0tFzrCJ9P33zhLAmDiZOTUcVXcTTrE8QB70/spmplu ndsP7R+83x0WYMgnQBFfAd9gc/maQg5UkJm0JkwUSCAHgxtx0GTvHsb+KvxAopGmmQN5rdoE9KKPR 3CxNwQJWdjZNhq/ifAOs+wdsxFXu1n4U5bJtif/hAiqY8XQQft49dgqs8XacVBhtuFY/pNE5+eT4U C05GWYEgBqT15Q==; Received: from [84.214.173.6] (port=36034 helo=localhost) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oShNG-0005Zf-0M; Mon, 29 Aug 2022 12:12:30 -0400 From: Marius Bakke To: Konrad Hinsen , 57415-done@debbugs.gnu.org Subject: Re: [bug#57415] [PATCH 2/2] gnu: snakemake-7: Convert dependencies to propagated-inputs In-Reply-To: References: Date: Mon, 29 Aug 2022 18:12:28 +0200 Message-ID: <87pmgjc9lf.fsf@gnu.org> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 57415-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) --=-=-= Content-Type: text/plain Konrad Hinsen skriver: > * gnu/packages/python-xyz.scm (snakemake-7): Ensure that > "python -m snakemake" works (because snakemake uses it internally) Applied, thanks! I took the liberty to add the missing [inputs], [arguments], etc fiels to the commit message of these snakemake patches. --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iIUEARYKAC0WIQRNTknu3zbaMQ2ddzTocYulkRQQdwUCYwzlbA8cbWFyaXVzQGdu dS5vcmcACgkQ6HGLpZEUEHfSUAEApVDUCJKqgGUrk881DFsw1/vBYCzPi8d1tEnG t+LDTtgA/j7slyllZnF2GX4UDpBG9XBjDfoleVUYqXZ9fG5x4HcK =O+NO -----END PGP SIGNATURE----- --=-=-=-- ------------=_1661789582-27962-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 25 Aug 2022 18:47:40 +0000 Received: from localhost ([127.0.0.1]:51281 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oRHtE-0000Ql-Jq for submit@debbugs.gnu.org; Thu, 25 Aug 2022 14:47:40 -0400 Received: from lists.gnu.org ([209.51.188.17]:46930) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oRHtC-0000QZ-DH for submit@debbugs.gnu.org; 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Thu, 25 Aug 2022 14:47:33 -0400 (EDT) From: Konrad Hinsen To: guix-patches@gnu.org Subject: [PATCH 2/2] gnu: snakemake-7: Convert dependencies to propagated-inputs Date: Thu, 25 Aug 2022 20:47:32 +0200 Message-ID: MIME-Version: 1.0 Content-Type: text/plain Received-SPF: pass client-ip=66.111.4.25; envelope-from=konrad.hinsen@fastmail.net; helo=out1-smtp.messagingengine.com X-Spam_score_int: -27 X-Spam_score: -2.8 X-Spam_bar: -- X-Spam_report: (-2.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_LOW=-0.7, RCVD_IN_MSPIKE_H3=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.2 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) * gnu/packages/python-xyz.scm (snakemake-7): Ensure that "python -m snakemake" works (because snakemake uses it internally) --- gnu/packages/python-xyz.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 69e3b42927..31e13ad395 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -9803,7 +9803,7 @@ (define-public snakemake-7 ;; to the Google Storage service. (delete-file "tests/test_google_lifesciences.py") (invoke "pytest"))))))) - (inputs + (propagated-inputs (list python-appdirs python-configargparse python-connection-pool -- 2.37.1 ------------=_1661789582-27962-1--