From debbugs-submit-bounces@debbugs.gnu.org Mon Aug 22 07:00:10 2022 Received: (at submit) by debbugs.gnu.org; 22 Aug 2022 11:00:10 +0000 Received: from localhost ([127.0.0.1]:38088 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oQ5A9-0006P1-2W for submit@debbugs.gnu.org; Mon, 22 Aug 2022 07:00:10 -0400 Received: from lists.gnu.org ([209.51.188.17]:34366) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oQ5A4-00067H-6W for submit@debbugs.gnu.org; Mon, 22 Aug 2022 07:00:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:60650) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oQ5A2-0003Y0-Se for guix-patches@gnu.org; Mon, 22 Aug 2022 07:00:03 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:53033) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oQ59z-0000qV-Vn for guix-patches@gnu.org; Mon, 22 Aug 2022 07:00:02 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1661165993; x=1662980394; bh=9Ww4C1uMFcBRhYL 4gUJdpt6tOWRa+XczuQoKSPaQQuA=; b=nf63BjwM6h54qbH+bbN7fd2rd2cisCi 35CggJIuqTmmYJLIaPnbvRiwgG7jg4NlGqMgkw81CyeEnQU0fDFqJL2T3doETd50 vAO7Lw3GlIVWehWzLAaR9QHMohb4F3hbJijwt3hnvip8NxovGsLs08UyWI5uDcqj eoF/9mnpysmE= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id A6557160239 for ; Mon, 22 Aug 2022 12:59:53 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.12; Mon, 22 Aug 2022 12:59:53 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-pcaexplorer. Date: Mon, 22 Aug 2022 12:59:41 +0200 Message-ID: <20220822105941.30972-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.37.2 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27092.007 X-TM-AS-Result: No-10--6.445700-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEF+2 MpmaGp/lRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v8XjfR3d0weRm1/OiWPM9c78ZC 684qc/JdL5SVR+U8Zdsign5HsLTCTw+spnTDuewPdCok3ibXlQeuLFZZYlisfHxPMjOKY7A8Lbi gRnpKlKTpcQTtiHDgWTevFo1Op6x4xy9kErf6Ln4FbokEwQnKAd0w0WxSgj/kOWgT9sintTA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.445700-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27092.007 X-TM-SNTS-SMTP: 2CAAC7642816B1D88349416FF34FD7C90CBEA45ECAC2B47962C97E3AA461007B2002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-pcaexplorer): New variable. --- gnu/packages/bioconductor.scm | 55 +++++++++++++++++++++++++++++++++++ 1 file changed, 55 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7d2ca413e9..cfcad75001 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5049,6 +5049,61 @@ (define-public r-organismdbi the fact that each of these packages implements a select methods.") (license license:artistic2.0))) +(define-public r-pcaexplorer + (package + (name "r-pcaexplorer") + (version "2.22.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "pcaExplorer" version)) + (sha256 + (base32 + "0xkafpi6y5n8hljdaj183hd5z4ik7lpbklg2cbx1hwfz4n4hh1bl")))) + (properties `((upstream-name . "pcaExplorer"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationdbi + r-base64enc + r-biomart + r-deseq2 + r-dt + r-genefilter + r-genomicranges + r-ggplot2 + r-ggrepel + r-go-db + r-gostats + r-heatmaply + r-iranges + r-knitr + r-limma + r-nmf + r-pheatmap + r-plotly + r-plyr + r-rmarkdown + r-s4vectors + r-scales + r-shiny + r-shinyace + r-shinybs + r-shinydashboard + r-summarizedexperiment + r-threejs + r-tidyr + r-topgo)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/federicomarini/pcaExplorer") + (synopsis + "Interactive Visualization of RNA-seq Data Using a Principal Components Approach") + (description + "This package provides functionality for interactive visualization of RNA-seq +datasets based on Principal Components Analysis. The methods provided allow for +quick information extraction and effective data exploration. A Shiny +application encapsulates the whole analysis.") + (license license:expat))) + (define-public r-pcamethods (package (name "r-pcamethods") base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90 -- 2.37.2 From debbugs-submit-bounces@debbugs.gnu.org Tue Aug 23 05:53:53 2022 Received: (at 57339-done) by debbugs.gnu.org; 23 Aug 2022 09:53:53 +0000 Received: from localhost ([127.0.0.1]:42622 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oQQbY-0005Fx-On for submit@debbugs.gnu.org; Tue, 23 Aug 2022 05:53:53 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21138) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oQQbU-0005Fi-Da; Tue, 23 Aug 2022 05:53:52 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1661248426; cv=none; d=zohomail.com; s=zohoarc; b=C9kSldehCo31vuqGkWxaFIZwzibUcC3SpjTRq6X8mhM37Hk50DKbaw0rpwqnqdb4lNyfidRNtEYWmQnLumBQa0jddduz7XPFf8Zq50iSrY547X0bAw+uUopHUKzgmt+x2G4h2rEouVk/c7Jv3XGkATf2Ob3PdrNtqgpk3ovWlXw= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1661248426; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=TfpRO6c8/0/T2vXn5hwVA9y8B+43CyDX+ZjVwj/po9Y=; b=XKHu9ERVPac6ztf8faLH7ZYzuvoSp/YiF0rgn+wX/e3kcgpE47Ethuhd4wLy02xzIg5fzQlIAHMbAnNF+rL2P9WY3lpL+y+9cOswrG+hg/BnJgRUBwsQCwCQjt++mFeHlWodXlrbdFQHXwtFlFKg5sdBKjDV5QAJtZ7DtUxwHuc= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1661248426; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=TfpRO6c8/0/T2vXn5hwVA9y8B+43CyDX+ZjVwj/po9Y=; b=DTXOh2yhdc5duemFhd9Kz8P/cj6O7vCRMPLgZmp9aL7gLa5jmHmU5pDE51KO0/k5 aclgwYcU8038MITV1ZBwVT7B5qnmzj4YbpsaW4co03OXq3dZJ95qLKMFOkFg+krTpaL deppO4NbHSerFzHBMspUVjjXlBO1F8QclJq54TLQ= Received: from localhost (84-109-142-46.pool.kielnet.net [46.142.109.84]) by mx.zohomail.com with SMTPS id 1661248425189599.3536819562205; Tue, 23 Aug 2022 02:53:45 -0700 (PDT) References: <20220822105941.30972-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.8.7; emacs 28.1 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#57339] [PATCH] gnu: Add r-pcaexplorer. Date: Tue, 23 Aug 2022 11:53:30 +0200 In-reply-to: <20220822105941.30972-1-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87wnazz3oa.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 57339-done Cc: 57339-done@debbugs.gnu.org, debbugs-submit@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/bioconductor.scm (r-pcaexplorer): New variable. Applied, thanks! --=20 Ricardo From unknown Tue Jun 24 17:29:24 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Tue, 20 Sep 2022 11:24:09 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator