GNU bug report logs - #57338
[PATCH] gnu: Add r-parathyroidse.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#57338: closed ([PATCH] gnu: Add r-parathyroidse.)
Date: Tue, 23 Aug 2022 09:55:02 +0000

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Your message dated Tue, 23 Aug 2022 11:53:52 +0200
with message-id <87sflnz3nm.fsf <at> elephly.net>
and subject line Re: [bug#57338] [PATCH] gnu: Add r-parathyroidse.
has caused the debbugs.gnu.org bug report #57338,
regarding [PATCH] gnu: Add r-parathyroidse.
to be marked as done.

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help-debbugs <at> gnu.org.)


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57338: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=57338
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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-parathyroidse.
Date: Mon, 22 Aug 2022 12:33:19 +0200

* gnu/packages/bioconductor.scm (r-parathyroidse): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7d2ca413e9..b4f880a080 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1541,6 +1541,30 @@ (define-public r-curatedtcgadata
 across the entire multi-'omics experiment.")
     (license license:artistic2.0)))
 
+(define-public r-parathyroidse
+  (package
+    (name "r-parathyroidse")
+    (version "1.34.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "parathyroidSE" version
+                                     'experiment))
+              (sha256
+               (base32
+                "1h33x55c4gbzmh085skqif04wdcvjp2l9fm55qzwws27kwd30c16"))))
+    (properties `((upstream-name . "parathyroidSE")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-summarizedexperiment))
+    (home-page "https://bioconductor.org/packages/parathyroidSE")
+    (synopsis "RangedSummarizedExperiment for RNA-Seq of parathyroid tumors")
+    (description
+     "This package provides @code{RangedSummarizedExperiment} objects of read
+counts in genes and exonic parts for paired-end RNA-Seq data from experiments on
+primary cultures of parathyroid tumors.  The sequencing was performed on tumor
+cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and control).")
+    ;; The author(s) mentions only LGPL without any specific version.
+    (license license:lgpl2.1+)))
+
 (define-public r-tcgabiolinksgui-data
   (package
     (name "r-tcgabiolinksgui-data")

base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90
-- 
2.37.2

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 57338-done <at> debbugs.gnu.org
Subject: Re: [bug#57338] [PATCH] gnu: Add r-parathyroidse.
Date: Tue, 23 Aug 2022 11:53:52 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioconductor.scm (r-parathyroidse): New variable.

Applied, thanks!

-- 
Ricardo

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