GNU bug report logs - #57077
guix-jupyter fails a test

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ludovic Courtès <ludo <at> gnu.org>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#57077: closed (guix-jupyter fails a test)
Date: Fri, 20 Jan 2023 11:25:01 +0000

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Your message dated Fri, 20 Jan 2023 12:24:07 +0100
with message-id <877cxh8n54.fsf_-_ <at> gnu.org>
and subject line Re: bug#57077: guix-jupyter fails a test
has caused the debbugs.gnu.org bug report #57077,
regarding guix-jupyter fails a test
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
57077: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=57077
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From: Andreas Enge <andreas <at> enge.fr>
To: bug-guix <at> gnu.org
Subject: guix-jupyter fails a test
Date: Tue, 9 Aug 2022 15:23:57 +0200

Hello,

guix-jupyter currently fails to build with the error message below. While I
noticed it when updating python-sympy, the problem was already present
before.

Andreas


test-name: execute_request
location: /tmp/guix-build-guix-jupyter-0.2.2.drv-0/source/tests/kernels.scm:100
source:
+ (test-equal
+   "execute_request"
+   42
+   (let ((request
+           (message
+             (header "execute_request" "luser" "12345")
+             (scm->json-string
+               (execute-request->json
+                 (execute-request (code "40 + 2\n")))))))
+     (send-message %kernel request)
+     (let* ((replies
+              (unfold
+                (cut > <> 4)
+                (lambda (_) (read-message %kernel 10000))
+                #{1+}#
+                0)))
+       (define (type-predicate type)
+         (lambda (message)
+           (string=? (message-type message) type)))
+       (and (every message? (pk 'replies replies))
+            (match (filter (type-predicate "status") replies)
+                   ((busy idle)
+                    (and (eq? 'busy
+                              (kernel-status-execution-state
+                                (json->kernel-status (message-content busy))))
+                         (eq? 'idle
+                              (kernel-status-execution-state
+                                (json->kernel-status (message-content idle))))
+                         (equal?
+                           (message-parent-header busy)
+                           (message-header request))
+                         (equal?
+                           (message-parent-header idle)
+                           (message-header request)))))
+            (let ((input (find (type-predicate "execute_input") replies)))
+              (equal?
+                (message-parent-header input)
+                (message-header request)))
+            (let ((reply (find (type-predicate "execute_reply") replies)))
+              (equal?
+                (message-parent-header reply)
+                (message-header request)))
+            (let ((result
+                    (find (type-predicate "execute_result") replies)))
+              (and (equal?
+                     (message-parent-header result)
+                     (message-header request))
+                   (let* ((content
+                            (json-string->scm (message-content result)))
+                          (data (assoc-ref content "data"))
+                          (text (assoc-ref data "text/plain")))
+                     (string->number text))))))))

;;; (replies (#<<message> header: #<<header> id: "5103841f-98e1ea45964e58d9ba214dc5_900_3" user: "username" session: "5103841f-98e1ea45964e58d9ba214dc5" date: "2022-08-09T13:21:24.436017Z" type: "kernel_info_reply" version: "5.3" sender: #f> parent-header: #<<header> id: "7b136e32ddcbe2e226edffb116a4fca9" user: "luser" session: "12345" date: "2022-08-09T13:21:24.298532000" type: "kernel_info_request" version: "5.0" sender: #f> metadata: "{}" content: "{\"status\": \"ok\", \"protocol_version\": \"5.3\", \"implementation\": \"ipython\", \"implementation_version\": \"8.2.0\", \"language_info\": {\"name\": \"python\", \"version\": \"3.9.9\", \"mimetype\": \"text/x-python\", \"codemirror_mode\": {\"name\": \"ipython\", \"version\": 3}, \"pygments_lexer\": \"ipython3\", \"nbconvert_exporter\": \"python\", \"file_extension\": \".py\"}, \"banner\": \"Python 3.9.9 (main, Jan  1 1970, 00:00:01) \\nType 'copyright', 'credits' or 'license' for more information\\nIPython 8.2.0 -- An enhanced Interactive Python. Type '?' for help.\\n\", \"help_links\": [{\"text\": \"Python Reference\", \"url\": \"https://docs.python.org/3.9\"}, {\"text\": \"IPython Reference\", \"url\": \"https://ipython.org/documentation.html\"}, {\"text\": \"NumPy Reference\", \"url\": \"https://docs.scipy.org/doc/numpy/reference/\"}, {\"text\": \"SciPy Reference\", \"url\": \"https://docs.scipy.org/doc/scipy/reference/\"}, {\"text\": \"Matplotlib Reference\", \"url\": \"https://matplotlib.org/contents.html\"}, {\"text\": \"SymPy Reference\", \"url\": \"http://docs.sympy.org/latest/index.html\"}, {\"text\": \"pandas Reference\", \"url\": \"https://pandas.pydata.org/pandas-docs/stable/\"}]}" buffers: ()> #<<message> header: #<<header> id: "5103841f-98e1ea45964e58d9ba214dc5_900_4" user: "username" session: "5103841f-98e1ea45964e58d9ba214dc5" date: "2022-08-09T13:21:24.438407Z" type: "status" version: "5.3" sender: #vu8(107 101 114 110 101 108 46 100 53 55 102 102 101 102 53 45 48 98 102 50 45 52 97 57 102 45 97 99 50 52 45 53 53 100 54 97 97 100 102 53 56 52 97 46 115 116 97 116 117 115)> parent-header: #<<header> id: "7b136e32ddcbe2e226edffb116a4fca9" user: "luser" session: "12345" date: "2022-08-09T13:21:24.298532000" type: "kernel_info_request" version: "5.0" sender: #f> metadata: "{}" content: "{\"execution_state\": \"idle\"}" buffers: ()> #<<message> header: #<<header> id: "5103841f-98e1ea45964e58d9ba214dc5_900_5" user: "username" session: "5103841f-98e1ea45964e58d9ba214dc5" date: "2022-08-09T13:21:24.470543Z" type: "status" version: "5.3" sender: #vu8(107 101 114 110 101 108 46 100 53 55 102 102 101 102 53 45 48 98 102 50 45 52 97 57 102 45 97 99 50 52 45 53 53 100 54 97 97 100 102 53 56 52 97 46 115 116 97 116 117 115)> parent-header: #<<header> id: "b101b0c27f41055fc03178fdce86a4f6" user: "luser" session: "12345" date: "2022-08-09T13:21:24.465152000" type: "execute_request" version: "5.0" sender: #f> metadata: "{}" content: "{\"execution_state\": \"busy\"}" buffers: ()> #<<message> header: #<<header> id: "5103841f-98e1ea45964e58d9ba214dc5_900_6" user: "username" session: "5103841f-98e1ea45964e58d9ba214dc5" date: "2022-08-09T13:21:24.471181Z" type: "execute_input" version: "5.3" sender: #vu8(107 101 114 110 101 108 46 100 53 55 102 102 101 102 53 45 48 98 102 50 45 52 97 57 102 45 97 99 50 52 45 53 53 100 54 97 97 100 102 53 56 52 97 46 101 120 101 99 117 116 101 95 105 110 112 117 116)> parent-header: #<<header> id: "b101b0c27f41055fc03178fdce86a4f6" user: "luser" session: "12345" date: "2022-08-09T13:21:24.465152000" type: "execute_request" version: "5.0" sender: #f> metadata: "{}" content: "{\"code\": \"40 + 2\\n\", \"execution_count\": 1}" buffers: ()> #<<message> header: #<<header> id: "5103841f-98e1ea45964e58d9ba214dc5_900_7" user: "username" session: "5103841f-98e1ea45964e58d9ba214dc5" date: "2022-08-09T13:21:24.497586Z" type: "execute_result" version: "5.3" sender: #vu8(107 101 114 110 101 108 46 100 53 55 102 102 101 102 53 45 48 98 102 50 45 52 97 57 102 45 97 99 50 52 45 53 53 100 54 97 97 100 102 53 56 52 97 46 101 120 101 99 117 116 101 95 114 101 115 117 108 116)> parent-header: #<<header> id: "b101b0c27f41055fc03178fdce86a4f6" user: "luser" session: "12345" date: "2022-08-09T13:21:24.465152000" type: "execute_request" version: "5.0" sender: #f> metadata: "{}" content: "{\"data\": {\"text/plain\": \"42\"}, \"metadata\": {}, \"execution_count\": 1}" buffers: ()>))
expected-value: 42
actual-value: #f
result: FAIL



error: in phase 'check': uncaught exception:
%exception #<&invoke-error program: "make" arguments: ("check" "-j" "4") exit-status: 2 term-signal: #f stop-signal: #f>
phase `check' failed after 10.7 seconds
command "make" "check" "-j" "4" failed with status 2
builder for `/gnu/store/i1r5p6g0k3a98316x3s2yrpx9kwjq9vn-guix-jupyter-0.2.2.drv' failed with exit code 1

[Message part 3 (message/rfc822, inline)]

From: Ludovic Courtès <ludo <at> gnu.org>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 57077-done <at> debbugs.gnu.org
Subject: Re: bug#57077: guix-jupyter fails a test
Date: Fri, 20 Jan 2023 12:24:07 +0100

Hi Mădălin,

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> skribis:

> Build drops warnings regarding 'guild' and the check phase does not
> have write permissions for its tests.
> [build]: Remove the warnings generated by the 'guild' by setting the
> "GUILE_AUTO_COMPILE" to 0.
> [check]: Set the homeless-shelter to /tmp for write permission.

I had completely overlooked this message of yours and committed just now
a similar fix in b60f3941b95dc5351e2336cf694480d099a91233.  This is
embarrassing, sorry about that!

Do feel free to ping me or whoever last touched the package or the
relevant team¹ for the package when a patch of yours gets stuck.

The good news is that Guix-Jupyter is finally fixed.  :-)
I hope it’s useful to you.

My apologies again, and thank you for your work!

Ludo’.

¹ https://guix.gnu.org/manual/devel/en/html_node/Teams.html

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