Subject: bug#56950: closed (Re: [bug#56950] [PATCH] gnu: Add r-phylotools.)

From: [email-masked] (GNU bug Tracking System)
Date: Wed, 03 Aug 2022 13:29:01 +0000

Your bug report

#56950: [PATCH] gnu: Add r-phylotools.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
56950: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56950
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: Re: [bug#56950] [PATCH] gnu: Add r-phylotools.
From: Ricardo Wurmus <[email-masked]>
To: Mădălin Ionel Patrașcu<[email-masked]>
Cc: [email-masked]
Date: Wed, 03 Aug 2022 15:27:43 +0200
List-Id: <debbugs-submit.debbugs.gnu.org>

Mădălin Ionel Patrașcu <[email-masked]> writes:

> * gnu/packages/cran.scm (r-phylotools): New variable.

This was already added with commit 20f9473532dd288c536581df2573ece2079f7a27.

-- 
Ricardo

Subject: [PATCH] gnu: Add r-phylotools.
From: Mădălin Ionel Patrașcu<[email-masked]>
To: <[email-masked]>
Date: Wed, 3 Aug 2022 14:49:19 +0200
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/cran.scm (r-phylotools): New variable.
---
 gnu/packages/cran.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 094dd4e449..e90a4a9b08 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1376,6 +1376,29 @@ (define-public r-pheatmap
 control over dimensions and appearance.")
     (license license:gpl2+)))
 
+(define-public r-phylotools
+  (package
+    (name "r-phylotools")
+    (version "0.2.2")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "phylotools" version))
+              (sha256
+               (base32
+                "1dhk1ncp5zi4zl1xfnjz64v983dm7bq7iimfjin80j0bdcpps44w"))))
+    (properties `((upstream-name . "phylotools")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-ape))
+    (home-page "https://github.com/helixcn/phylotools")
+    (synopsis "Phylogenetic tools for eco-phylogenetics")
+    (description
+     "This package @code{phylotool} provides a collection of tools for building
+@dfn{RAxML} (Randomized Axelerated Maximum Likelihood) supermatrix using
+@code{PHYLIP} or aligned @code{FASTA} files.  These functions will be useful for
+building large dfn{phylogenies} (history of the evolution of a species or group)
+using multiple markers.")
+    (license license:gpl2)))
+
 (define-public r-pnwcolors
   (package
     (name "r-pnwcolors")

base-commit: c4e58c119d637ef434c4b52437f677dfb69eb091
-- 
2.37.1