From debbugs-submit-bounces@debbugs.gnu.org Wed Aug 03 08:49:51 2022 Received: (at submit) by debbugs.gnu.org; 3 Aug 2022 12:49:51 +0000 Received: from localhost ([127.0.0.1]:46850 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oJDot-0000fG-GA for submit@debbugs.gnu.org; Wed, 03 Aug 2022 08:49:51 -0400 Received: from lists.gnu.org ([209.51.188.17]:54652) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oJDop-0000f6-FP for submit@debbugs.gnu.org; Wed, 03 Aug 2022 08:49:49 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41104) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oJDop-0003s8-7I for guix-patches@gnu.org; Wed, 03 Aug 2022 08:49:47 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:33077) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1oJDom-0006It-9E for guix-patches@gnu.org; Wed, 03 Aug 2022 08:49:46 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1659530972; x=1661345373; bh=8NDc3sBpZc2xlDz iL8cxz6FmQLMvVQDDXK9h+uGVY5U=; b=HkF0mFM7k9+ML3C/R3L3f2Je7PbTwk0 JuRx2VIb4HdLMFJ8wpAtvKOF1GAxl309sJJ6tD1KsJnOT2W7YXfy+yyxHIDNbL+c HNDeqCb4TgJn7VF1cKkhJMWklt/xg+6xpUaxXIyfrKG6ZIpIQKiD1ov/ylP4NcEV phgDyNTovxDI= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id F411430036E for ; Wed, 3 Aug 2022 14:49:31 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Wed, 3 Aug 2022 14:49:31 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-phylotools. Date: Wed, 3 Aug 2022 14:49:19 +0200 Message-ID: <20220803124919.7992-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.37.1 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27054.007 X-TM-AS-Result: No-10--3.022600-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2v/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCxSHjB5Y+o5ZDoUdFbHYUawY2k BmAPfHzOC/cGE7/ouQMNNmRo2tcL/Kz8U6m7mv8DGL//8mlodA0LixrsCJ1jTlCkt7JatNPWeAi CmPx4NwGmRqNBHmBveVDC1CbuJXmMqtq5d3cxkNRqXnrxrKCOX8GXqslKsy8qTZdNQvAocHiM6c pZI6dw0iI+TSykK4W8+knGswRGgc1rEu3gbI1DzNQI2yNaNCCTgteOHE9Pc8+IYX5UR7gKtDUEk BTZ8vOLxlyTCXQR4xioA5PA4dQuxuYpJR2kheXd+3BndfXUhXQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.022600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27054.007 X-TM-SNTS-SMTP: 90279682A20BA712B0065C9400F5008D16F608B633F616573227498B2245CC8E2002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-phylotools): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 094dd4e449..e90a4a9b08 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1376,6 +1376,29 @@ (define-public r-pheatmap control over dimensions and appearance.") (license license:gpl2+))) +(define-public r-phylotools + (package + (name "r-phylotools") + (version "0.2.2") + (source (origin + (method url-fetch) + (uri (cran-uri "phylotools" version)) + (sha256 + (base32 + "1dhk1ncp5zi4zl1xfnjz64v983dm7bq7iimfjin80j0bdcpps44w")))) + (properties `((upstream-name . "phylotools"))) + (build-system r-build-system) + (propagated-inputs (list r-ape)) + (home-page "https://github.com/helixcn/phylotools") + (synopsis "Phylogenetic tools for eco-phylogenetics") + (description + "This package @code{phylotool} provides a collection of tools for building +@dfn{RAxML} (Randomized Axelerated Maximum Likelihood) supermatrix using +@code{PHYLIP} or aligned @code{FASTA} files. These functions will be useful for +building large dfn{phylogenies} (history of the evolution of a species or group) +using multiple markers.") + (license license:gpl2))) + (define-public r-pnwcolors (package (name "r-pnwcolors") base-commit: c4e58c119d637ef434c4b52437f677dfb69eb091 -- 2.37.1 From debbugs-submit-bounces@debbugs.gnu.org Wed Aug 03 09:28:19 2022 Received: (at 56950-done) by debbugs.gnu.org; 3 Aug 2022 13:28:19 +0000 Received: from localhost ([127.0.0.1]:46893 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oJEQ5-0001cE-Nx for submit@debbugs.gnu.org; Wed, 03 Aug 2022 09:28:19 -0400 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21041) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oJEQ0-0001c2-1y for 56950-done@debbugs.gnu.org; Wed, 03 Aug 2022 09:28:16 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1659533289; cv=none; d=zohomail.com; s=zohoarc; b=HOEsTf3fkGdu5k46/+C/57iZ6qynXWH6/bsAWTaQkHgdBIsea8WRWFD0mgTLUjoTzCtia5VBR5YNj6bi4JvhPIEn9Xhv1BKvOKXxijKw7zJppA8yOmc8Mgc4yZbnB+NGUVocUTiI6JyNqMP99OqZhYhBCGzi7Tz5pXdlZpU3XtQ= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1659533289; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=oKAtUCVE8cjnDg/YIh9F0EpbcIMGvWHme1n6YVVlh18=; b=hGE5bzFw73G/caTRMbIJxTJpSu5pJM2cPlHSiJ//GETg8o7OM18C8mCpGBPYanET1WtN74H3Uj3rS9AHZms6tzHWyyqZpILV6ugkDCT2uka7K4Freq8KFpwUeGTqdErsk16CIT6u6I5qhjEUGiPx5b/LKUe9FsOmGjetk7ebISI= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1659533289; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=oKAtUCVE8cjnDg/YIh9F0EpbcIMGvWHme1n6YVVlh18=; b=gUz7RnXNXW51m/3RtE5cG5gohiszZ9JDm1l3VtZa+nnHeaVoYeeFIgRcQCFBo7e6 Kw8DbvgUZJJFjiYVO73X8tycmPhF+cesWz3OfXlBnknsIxBA6+SFjy+3JuCF1JigInf zo0k3AQ9yOPZYmcEIHNWCDG8a49ZW2EVbCvZe4Bc= Received: from localhost (i5E862DEA.versanet.de [94.134.45.234]) by mx.zohomail.com with SMTPS id 1659533288236835.5449063155944; Wed, 3 Aug 2022 06:28:08 -0700 (PDT) References: <20220803124919.7992-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.8.7; emacs 28.1 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#56950] [PATCH] gnu: Add r-phylotools. Date: Wed, 03 Aug 2022 15:27:43 +0200 In-reply-to: <20220803124919.7992-1-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87k07p4ftm.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 56950-done Cc: 56950-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/cran.scm (r-phylotools): New variable. This was already added with commit 20f9473532dd288c536581df2573ece2079f7a27. --=20 Ricardo From unknown Fri Jun 20 07:17:15 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Thu, 01 Sep 2022 11:24:10 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator