GNU bug report logs - #56790
[PATCH] gnu: Add r-millefy.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#56790: closed ([PATCH] gnu: Add r-millefy.)
Date: Mon, 01 Aug 2022 13:25:02 +0000

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Your message dated Mon, 01 Aug 2022 15:24:03 +0200
with message-id <87sfmgnlk9.fsf <at> elephly.net>
and subject line Re: [bug#56790] [PATCH] gnu: Add r-millefy.
has caused the debbugs.gnu.org bug report #56790,
regarding [PATCH] gnu: Add r-millefy.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
56790: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56790
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Contact help-debbugs <at> gnu.org with problems

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-millefy.
Date: Wed, 27 Jul 2022 10:17:42 +0200

* gnu/packages/bioinformatics.scm (r-millefy): New variable.
---
 gnu/packages/bioinformatics.scm | 37 ++++++++++++++++++++++++++++++++-
 1 file changed, 36 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 325c159df1..cf736dfbaa 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11,7 +11,7 @@
 ;;; Copyright © 2017, 2021, 2022 Arun Isaac <arunisaac <at> systemreboot.net>
 ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua <at> nextjournal.com>
 ;;; Copyright © 2018 Gábor Boskovits <boskovits <at> gmail.com>
-;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
+;;; Copyright © 2018, 2019, 2020, 2021, 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
 ;;; Copyright © 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer <at> gmail.com>
 ;;; Copyright © 2019 Brian Leung <bkleung89 <at> gmail.com>
 ;;; Copyright © 2019 Brett Gilio <brettg <at> gnu.org>
@@ -7523,6 +7523,41 @@ (define-public r-scde
     ;; See https://github.com/hms-dbmi/scde/issues/38
     (license license:gpl2)))
 
+(define-public r-millefy
+  (package
+    (name "r-millefy")
+    (version "0.1.9-beta")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/yuifu/millefy")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0z2y0x99f761pxvg6n37cmnyrnj699jhjk43pvk05sa86iykgizl"))))
+    (properties `((upstream-name . "millefy")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-data-table
+           r-destiny
+           r-dplyr
+           r-genomicranges
+           r-iranges
+           r-magrittr
+           r-rsamtools
+           r-rtracklayer
+           r-tidyr))
+    (home-page "https://github.com/yuifu/millefy")
+    (synopsis "Make millefy plot with single-cell RNA-seq data")
+    (description "@code{Millefy} is a tool for visualizing read coverage of
+@dfn{scRNA-seq}(single-cell RNA sequencing) datasets in genomic contexts.  By
+dynamically and automatically reorder single cells based on locus-specific
+pseudo time, @code{Millefy} highlights cell-to-cell heterogeneity in read coverage
+of scRNA-seq data.")
+    (license license:expat)))
+
 (define-public r-misha
   (package
     (name "r-misha")

base-commit: dbcd7876566840f31b763e28bb74394f0914b397
-- 
2.37.1

[Message part 3 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 56790-done <at> debbugs.gnu.org
Subject: Re: [bug#56790] [PATCH] gnu: Add r-millefy.
Date: Mon, 01 Aug 2022 15:24:03 +0200

> * gnu/packages/bioinformatics.scm (r-millefy): New variable.

Applied, thanks!

-- 
Ricardo

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