GNU bug report logs - #56280
[PATCH] gnu: Add r-basespacer.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#56280: closed ([PATCH] gnu: Add r-basespacer.)
Date: Thu, 27 Oct 2022 13:44:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#56280: [PATCH] gnu: Add r-basespacer.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 56280 <at> debbugs.gnu.org.

-- 
56280: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56280
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 56280-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-basespacer.
Date: Thu, 27 Oct 2022 15:42:50 +0200

Applied with minor changes.  Thank you!

-- 
Ricardo

[Message part 3 (message/rfc822, inline)]

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-basespacer.
Date: Tue, 28 Jun 2022 17:13:54 +0200

* gnu/packages/bioconductor.scm (r-basespacer): New variable.
---
 gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..51aae2a0f7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,29 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-basespacer
+  (package
+    (name "r-basespacer")
+    (version "1.40.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "BaseSpaceR" version))
+              (sha256
+               (base32
+                "0jyw4pnybsd6ywpaamk5ywkrcib2z48farsnszmwq97zlbmra7fj"))))
+    (properties `((upstream-name . "BaseSpaceR")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-rcurl r-rjsonio))
+    (home-page "https://bioconductor.org/packages/BaseSpaceR")
+    (synopsis "R SDK for BaseSpace RESTful API")
+    (description
+     "This package provides a @code{R} interface to Illumina's BaseSpace cloud
+computing environment, enabling the fast development of data analysis and
+visualisation tools.  Besides providing an easy to use set of tools for
+manipulating the data from BaseSpace, it also facilitates the access to R's
+rich environment of statistical and data analysis open source tools.")
+    (license license:asl2.0)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
-- 
2.36.1

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