From debbugs-submit-bounces@debbugs.gnu.org Tue Jun 28 11:14:20 2022 Received: (at submit) by debbugs.gnu.org; 28 Jun 2022 15:14:20 +0000 Received: from localhost ([127.0.0.1]:56086 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o6Cur-0007Vr-R7 for submit@debbugs.gnu.org; Tue, 28 Jun 2022 11:14:20 -0400 Received: from lists.gnu.org ([209.51.188.17]:58242) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o6Cuq-0007Vk-96 for submit@debbugs.gnu.org; Tue, 28 Jun 2022 11:14:12 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:51220) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o6Cuq-0007z7-12 for guix-patches@gnu.org; Tue, 28 Jun 2022 11:14:12 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:57761) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o6Cun-0004Sl-Dg for guix-patches@gnu.org; Tue, 28 Jun 2022 11:14:11 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id 81DF0160239 for ; Tue, 28 Jun 2022 17:14:05 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1656429244; x=1658243645; bh=0Gkbgbfff0sB2BLNlf7pro4/NQk5oC9dfd8e19Q3DAE=; b=czEPrAyvlHMe SJBduqc68bOTzWNjBeXnjAL/o08ToiZqfdaKevtF6kiblVbcY9T7KKjRhELd/8L3 cpontTaJBwf7aNGFdp/ZrgmD8L5/XmvuKJm7p58Pu7N3QpKm4Rcyb7lm0Y7Psaf+ k12yxYKEUud8lpjpF0cVWknE0V+yCbY= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 6veRXRVaPRVG for ; Tue, 28 Jun 2022 17:14:04 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 28 Jun 2022 17:14:04 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Tue, 28 Jun 2022 17:14:04 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-basespacer. Date: Tue, 28 Jun 2022 17:13:54 +0200 Message-ID: <20220628151354.3760-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26984.000 X-TM-AS-Result: No-10--6.510400-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCxSHjB5Y+o5ZJdGI5Ic8lyFdZc 93MJ2JafWyW7tMV4Aecign5HsLTCTw+spnTDuewPdCok3ibXlQeuLFZZYlisfHxPMjOKY7A8Lbi gRnpKlKXb6cSLExxx2kU6UkIr/V+1OD8XxIk2EK5eUNnrxMbwdgDsdRSNAociQUsFswvVWd2cL2 xZokMhFMlhFDawTdQE= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.510400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26984.000 X-TM-SNTS-SMTP: 8046A4161402D96FE663B6F636F0C89E89578A6229792589845482CA90CB1F7E2002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-basespacer): New variable. --- gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..51aae2a0f7 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,29 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-basespacer + (package + (name "r-basespacer") + (version "1.40.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "BaseSpaceR" version)) + (sha256 + (base32 + "0jyw4pnybsd6ywpaamk5ywkrcib2z48farsnszmwq97zlbmra7fj")))) + (properties `((upstream-name . "BaseSpaceR"))) + (build-system r-build-system) + (propagated-inputs (list r-rcurl r-rjsonio)) + (home-page "https://bioconductor.org/packages/BaseSpaceR") + (synopsis "R SDK for BaseSpace RESTful API") + (description + "This package provides a @code{R} interface to Illumina's BaseSpace cloud +computing environment, enabling the fast development of data analysis and +visualisation tools. Besides providing an easy to use set of tools for +manipulating the data from BaseSpace, it also facilitates the access to R's +rich environment of statistical and data analysis open source tools.") + (license license:asl2.0))) + (define-public r-biocversion (package (name "r-biocversion") base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff -- 2.36.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Oct 27 09:43:19 2022 Received: (at 56280-done) by debbugs.gnu.org; 27 Oct 2022 13:43:19 +0000 Received: from localhost ([127.0.0.1]:56530 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oo3AF-00033v-HT for submit@debbugs.gnu.org; Thu, 27 Oct 2022 09:43:19 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21174) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oo3AD-00033n-B7 for 56280-done@debbugs.gnu.org; Thu, 27 Oct 2022 09:43:17 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1666878194; cv=none; d=zohomail.com; s=zohoarc; b=cLmU01RYyM7cv21tRZ6vuGVCNZUnTern/+rK97gAEV9EIP33ufgbJm8IfrGCYrjA+dGbsQ9/tB059DH9ZEv/d7YG1pSXFBgTdaHycMlCN9e1/2sYhIwB7VUY/JoTCOTjRaw8/FDeyrL9zdmaSks4L/aPYUFqOPbjGfxpwV3U8hc= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1666878194; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=wPFizuxISDdXLE8qIgIHpP1t2Iuoc4tkFYgjbCYQvcU=; b=Q4avpKjmGwi3gwh3q+scoo4OzL9tc6AmUy3D406c56NU14BpSw7i3E3vsYkotuxbWimrlHqGLzlSSHbSkitSqgzFiyy/5C70UN8l76WjNElKH8K4tlW2MXK2Nc48BELZArqY1L5mjI8HUj7N8g0BlbLXldlJR25bHi0xkqim6iY= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1666878194; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=wPFizuxISDdXLE8qIgIHpP1t2Iuoc4tkFYgjbCYQvcU=; b=hRHbqtotc3ADZid0QWL5WKfPDk20yJQmnQl7RnRi/DCPfIJekOIRzcr38Znq3c4V 1G4wExNUOpA+IlaEVnGWi35AH2T9vVr2DmeIPjoWfGOjX5GM/1Vh9TAeVl2gb6tfzac v3xvnoPOtyhk4QpNzN/Qrk4Lx/j2vX3L/pBr03QQ= Received: from localhost (151-110-142-46.pool.kielnet.net [46.142.110.151]) by mx.zohomail.com with SMTPS id 166687819126478.44464017293058; Thu, 27 Oct 2022 06:43:11 -0700 (PDT) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 56280-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-basespacer. Date: Thu, 27 Oct 2022 15:42:50 +0200 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87v8o5gz6b.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 56280-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied with minor changes. Thank you! -- Ricardo From unknown Sun Jun 22 08:05:46 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. 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