GNU bug report logs - #56186
[PATCH] gnu: Add python-deepdish.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Antero Mejr <antero <at> mailbox.org>
Subject: bug#56186: closed (Re: bug#56186: [PATCH] gnu: Add python-deepdish.)
Date: Sun, 03 Jul 2022 11:12:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#56186: [PATCH] gnu: Add python-deepdish.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 56186 <at> debbugs.gnu.org.

-- 
56186: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56186
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Ludovic Courtès <ludo <at> gnu.org>
To: Antero Mejr <antero <at> mailbox.org>
Cc: 56186-done <at> debbugs.gnu.org
Subject: Re: bug#56186: [PATCH] gnu: Add python-deepdish.
Date: Sun, 03 Jul 2022 13:11:12 +0200

[Message part 3 (text/plain, inline)]

Hi Antero,

Antero Mejr <antero <at> mailbox.org> skribis:

> * gnu/packages/python-science.scm (python-deepdish): New variable.

Applied with the changes below (inspired by ‘README.rst’), as per
<https://guix.gnu.org/manual/devel/en/html_node/Synopses-and-Descriptions.html>.

Thanks,
Ludo’.

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diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 135c6a99ff..747c84d493 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1396,5 +1396,10 @@ (define-public python-deepdish
                              python-tables))
     (home-page "https://github.com/uchicago-cs/deepdish")
     (synopsis "Python library for HDF5 file saving and loading")
-    (description "HDF5 saving/loading and other data science tools.")
+    (description
+     "Deepdish is a Python library to load and save HDF5 files.
+The primary feature of deepdish is its ability to save and load all kinds of
+data as HDF5.  It can save any Python data structure, offering the same ease
+of use as pickling or @code{numpy.save}, but with the language
+interoperability offered by HDF5.")
     (license license:bsd-3)))

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From: Antero Mejr <antero <at> mailbox.org>
To: guix-patches <at> gnu.org
Subject: [PATCH] gnu: Add python-deepdish.
Date: Fri, 24 Jun 2022 12:50:33 +0000

* gnu/packages/python-science.scm (python-deepdish): New variable.
---
 gnu/packages/python-science.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 56f109e3d5..0f5403b36b 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1367,3 +1367,34 @@ (define-public python-gpy
 Python, from the Sheffield machine learning group.  GPy implements a range of
 machine learning algorithms based on GPs.")
     (license license:bsd-3)))
+
+(define-public python-deepdish
+  (package
+    (name "python-deepdish")
+    (version "0.3.7")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "deepdish" version))
+              (sha256
+               (base32
+                "1wqzwh3y0mjdyba5kfbvlamn561d3afz50zi712c7klkysz3mzva"))))
+    (arguments
+     (list #:phases #~(modify-phases %standard-phases
+                        (add-after 'unpack 'dont-vendor-six
+                          (lambda _
+                            (delete-file "deepdish/six.py")
+                            (substitute* "deepdish/io/hdf5io.py"
+                              (("from deepdish import six") "import six"))
+                            (substitute* "deepdish/io/ls.py"
+                              (("from deepdish import io, six, __version__")
+                               "from deepdish import io, __version__
+import six
+")))))))
+    (build-system python-build-system)
+    (native-inputs (list python-pandas))
+    (propagated-inputs (list python-numpy python-scipy python-six
+                             python-tables))
+    (home-page "https://github.com/uchicago-cs/deepdish")
+    (synopsis "Python library for HDF5 file saving and loading")
+    (description "HDF5 saving/loading and other data science tools.")
+    (license license:bsd-3)))
-- 
2.36.1

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