From unknown Sun Jun 22 17:15:50 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#56166] [PATCH] gnu: Add r-awfisher. Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 23 Jun 2022 12:27:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 56166 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 56166@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.16559872144390 (code B ref -1); Thu, 23 Jun 2022 12:27:01 +0000 Received: (at submit) by debbugs.gnu.org; 23 Jun 2022 12:26:54 +0000 Received: from localhost ([127.0.0.1]:37689 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o4LvC-00018k-0Y for submit@debbugs.gnu.org; Thu, 23 Jun 2022 08:26:54 -0400 Received: from lists.gnu.org ([209.51.188.17]:56352) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o4Lv9-00018Z-Am for submit@debbugs.gnu.org; Thu, 23 Jun 2022 08:26:53 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:53648) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o4Lv8-0004ZL-Ua for guix-patches@gnu.org; Thu, 23 Jun 2022 08:26:51 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:56589) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o4Lv5-0002JG-PQ for guix-patches@gnu.org; Thu, 23 Jun 2022 08:26:50 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id E5491A039F for ; Thu, 23 Jun 2022 14:26:43 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655987202; x=1657801603; bh=2xLsoftZPqqNpbV4UOWQTz95rnqQXaj1goW5jAhD1xM=; b=DaLccWaQGIZe XZfMTJiIVFwh5Q2Oxt3CLSOK6oKBbIKDDq+ENcbBH6fyqfPKi4Vmh6SlbbGxpaXq vtuL8w17t4ppbnQANZ5iu2GLg9HqFCVolMhK8Q+Of/6N64AZ0eoIwt/A8nkHB0Iw QSIGtpBmSNx5CPHNgaeIZdtAO23AHKM= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id mV-EsXzyrEk8 for ; Thu, 23 Jun 2022 14:26:42 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Thu, 23 Jun 2022 14:26:42 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Thu, 23 Jun 2022 14:26:41 +0200 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Thu, 23 Jun 2022 14:26:29 +0200 Message-ID: <20220623122629.27603-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26972.007 X-TM-AS-Result: No-10--2.865400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6L2JUO7sQ9/wXjfR3d0weRrKw8Hx0EGitD/0 8AxvT+fCGsZX0q3FpiOhAZQXEXXZuCxH+nTDZ1NOrm7DrUlmNkIAy6p60ZV62yA7duzCw6dLdB/ CxWTRRu3aDLLDbFMGF20IlJvk9dNYM01zCtizCgrsyRbPDxPpb3D41aQsg011yQI6ogkVetHQJC 26a3VML+1P/EhBIZr1BkpU1EN1lfgnMiut0AGpZx6Xh3Vy4y2+O91s7FwLn8xC2a7GIAOqG8ody TXpQo3UZHwBcdw5+Mg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.865400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26972.007 X-TM-SNTS-SMTP: D34D5DCCCFACA9C2535954BD63E14E1760A0BF343FA81043D867F09D56F0EDB12002:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-awfisher): New variable. --- gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..072fc0f42a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,29 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-awfisher + (package + (name "r-awfisher") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AWFisher" version)) + (sha256 + (base32 + "050k7w0azsl7rqx2pxgccihzc2q8pmh6fyy4gib2d42sdyijr2n1")))) + (properties `((upstream-name . "AWFisher"))) + (build-system r-build-system) + (propagated-inputs + (list r-edger + r-limma)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AWFisher") + (synopsis "Fast computing for adaptively weighted fisher's method") + (description + "This package is an implementation of the adaptively weighted fisher's +method, including fast p-value computing, variability index, and meta-pattern.") + (license license:gpl3))) + (define-public r-biocversion (package (name "r-biocversion") base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 -- 2.36.1 From unknown Sun Jun 22 17:15:50 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Subject: bug#56166: closed ([PATCH] gnu: Add r-awfisher.) Message-ID: References: <87r0ynd903.fsf@elephly.net> <20220623122629.27603-1-madalinionel.patrascu@mdc-berlin.de> X-Gnu-PR-Message: they-closed 56166 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 56166@debbugs.gnu.org Date: Mon, 31 Oct 2022 20:39:01 +0000 Content-Type: multipart/mixed; boundary="----------=_1667248741-5679-1" This is a multi-part message in MIME format... ------------=_1667248741-5679-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #56166: [PATCH] gnu: Add r-awfisher. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 56166@debbugs.gnu.org. --=20 56166: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D56166 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1667248741-5679-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 56166-done) by debbugs.gnu.org; 31 Oct 2022 20:38:12 +0000 Received: from localhost ([127.0.0.1]:41957 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opbXw-0001SY-G1 for submit@debbugs.gnu.org; Mon, 31 Oct 2022 16:38:12 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21146) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opbXu-0001SQ-1B for 56166-done@debbugs.gnu.org; Mon, 31 Oct 2022 16:38:10 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1667248688; cv=none; d=zohomail.com; s=zohoarc; b=lVZXLnVh9FNvHGvPhJZ3sbJT5GwmSQm7jZeQ+Tt+nBu6IIBIqIP7wJ7LMtC5KHBDbVUnRtBTV4/nUzcT2p1aMAKQfDlWzdPS3E35hfdSE/zRjqEv+TL0pHuJOyo6BDpnkIXLA6aizCf5NZr1df0x+pD/Hrd1GHW3Xg4oQcKMyZ4= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1667248688; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=L75QG7s3ylljaNckMqJAX+cSVbDrlHGadJnCbS7A63DU4nwxsGMor7/iHDF9zlygOp35mkhrFEoAy7bnG0ndPuDNJAG6b0GEbiLb4/iU3tREbs01N8/bT4jtXDTa7IVcu4vFReLN6NgQ9woa0xfMFj8u9neE0Co9ACXgeabUT7Q= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1667248688; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=bRrtnTFCAT2j1A5NOWFkxMdGUXJ5EgbEDTQecc7Dmbu4qBFD8QH38t5NKLtUbKp3 z77Fy7RTgt1mfdZoV4jQpaPuoREZem0TNHRFE4sWKFMG/4nI587ZhLmIO5MUZmBVLKP 7VqZt/UU+vh3n7dGP9QnkUQVYNz53HCvwZKemWV4= Received: from localhost (155-111-142-46.pool.kielnet.net [46.142.111.155]) by mx.zohomail.com with SMTPS id 1667248687335512.2409795064933; Mon, 31 Oct 2022 13:38:07 -0700 (PDT) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 56166-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-awfisher. Date: Mon, 31 Oct 2022 21:37:34 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87r0ynd903.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 56166-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! -- Ricardo ------------=_1667248741-5679-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 23 Jun 2022 12:26:54 +0000 Received: from localhost ([127.0.0.1]:37689 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o4LvC-00018k-0Y for submit@debbugs.gnu.org; Thu, 23 Jun 2022 08:26:54 -0400 Received: from lists.gnu.org ([209.51.188.17]:56352) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o4Lv9-00018Z-Am for submit@debbugs.gnu.org; Thu, 23 Jun 2022 08:26:53 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:53648) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o4Lv8-0004ZL-Ua for guix-patches@gnu.org; Thu, 23 Jun 2022 08:26:51 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:56589) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o4Lv5-0002JG-PQ for guix-patches@gnu.org; Thu, 23 Jun 2022 08:26:50 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id E5491A039F for ; Thu, 23 Jun 2022 14:26:43 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655987202; x=1657801603; bh=2xLsoftZPqqNpbV4UOWQTz95rnqQXaj1goW5jAhD1xM=; b=DaLccWaQGIZe XZfMTJiIVFwh5Q2Oxt3CLSOK6oKBbIKDDq+ENcbBH6fyqfPKi4Vmh6SlbbGxpaXq vtuL8w17t4ppbnQANZ5iu2GLg9HqFCVolMhK8Q+Of/6N64AZ0eoIwt/A8nkHB0Iw QSIGtpBmSNx5CPHNgaeIZdtAO23AHKM= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id mV-EsXzyrEk8 for ; Thu, 23 Jun 2022 14:26:42 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Thu, 23 Jun 2022 14:26:42 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Thu, 23 Jun 2022 14:26:41 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-awfisher. Date: Thu, 23 Jun 2022 14:26:29 +0200 Message-ID: <20220623122629.27603-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26972.007 X-TM-AS-Result: No-10--2.865400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6L2JUO7sQ9/wXjfR3d0weRrKw8Hx0EGitD/0 8AxvT+fCGsZX0q3FpiOhAZQXEXXZuCxH+nTDZ1NOrm7DrUlmNkIAy6p60ZV62yA7duzCw6dLdB/ CxWTRRu3aDLLDbFMGF20IlJvk9dNYM01zCtizCgrsyRbPDxPpb3D41aQsg011yQI6ogkVetHQJC 26a3VML+1P/EhBIZr1BkpU1EN1lfgnMiut0AGpZx6Xh3Vy4y2+O91s7FwLn8xC2a7GIAOqG8ody TXpQo3UZHwBcdw5+Mg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.865400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26972.007 X-TM-SNTS-SMTP: D34D5DCCCFACA9C2535954BD63E14E1760A0BF343FA81043D867F09D56F0EDB12002:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-awfisher): New variable. --- gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..072fc0f42a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,29 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-awfisher + (package + (name "r-awfisher") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AWFisher" version)) + (sha256 + (base32 + "050k7w0azsl7rqx2pxgccihzc2q8pmh6fyy4gib2d42sdyijr2n1")))) + (properties `((upstream-name . "AWFisher"))) + (build-system r-build-system) + (propagated-inputs + (list r-edger + r-limma)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AWFisher") + (synopsis "Fast computing for adaptively weighted fisher's method") + (description + "This package is an implementation of the adaptively weighted fisher's +method, including fast p-value computing, variability index, and meta-pattern.") + (license license:gpl3))) + (define-public r-biocversion (package (name "r-biocversion") base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 -- 2.36.1 ------------=_1667248741-5679-1--