GNU bug report logs - #56159
[PATCH] gnu: Add r-asset.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#56159: closed ([PATCH] gnu: Add r-asset.)
Date: Mon, 31 Oct 2022 20:42:02 +0000

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Your message dated Mon, 31 Oct 2022 21:41:15 +0100
with message-id <87a65bd8uc.fsf <at> elephly.net>
and subject line [PATCH] gnu: Add r-asset.
has caused the debbugs.gnu.org bug report #56159,
regarding [PATCH] gnu: Add r-asset.
to be marked as done.

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help-debbugs <at> gnu.org.)


-- 
56159: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56159
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Contact help-debbugs <at> gnu.org with problems

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-asset.
Date: Thu, 23 Jun 2022 12:02:44 +0200

* gnu/packages/bioconductor.scm (r-asset): New variable.
---
 gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..98e7ee104d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,32 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-asset
+  (package
+    (name "r-asset")
+    (version "2.14.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "ASSET" version))
+              (sha256
+               (base32
+                "029acl5k9d4hnvy3jia9cr4rk6w31zn8b5s79i6lazq1cp236hbg"))))
+    (properties `((upstream-name . "ASSET")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-mass r-msm r-rmeta))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/ASSET")
+    (synopsis
+     "Subset-based association analysis of heterogeneous traits and subtypes")
+    (description
+     "This package is an @code{R} programme for the subset-based analysis of
+heterogeneous traits and disease subtypes.  @code{ASSET} allows the user to
+search through all possible subsets of z-scores to identify the subset of traits
+giving the best meta-analyzed z-score.  Further, it returns a p-value adjusting
+for the multiple-testing involved in the search.  It also allows for searching
+for the best combination of disease subtypes associated with each variant.")
+    (license license:gpl2)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
-- 
2.36.1

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 56159-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-asset.
Date: Mon, 31 Oct 2022 21:41:15 +0100

Applied, thanks!

-- 
Ricardo

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