From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 23 06:03:11 2022 Received: (at submit) by debbugs.gnu.org; 23 Jun 2022 10:03:11 +0000 Received: from localhost ([127.0.0.1]:37506 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o4Jg6-0003bN-SP for submit@debbugs.gnu.org; Thu, 23 Jun 2022 06:03:11 -0400 Received: from lists.gnu.org ([209.51.188.17]:47556) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o4Jg4-0003bE-VR for submit@debbugs.gnu.org; Thu, 23 Jun 2022 06:03:09 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:51404) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o4Jg4-0004XS-Ln for guix-patches@gnu.org; Thu, 23 Jun 2022 06:03:08 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:41819) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o4Jg1-0001nD-Ao for guix-patches@gnu.org; Thu, 23 Jun 2022 06:03:07 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id 0A7C516037B for ; Thu, 23 Jun 2022 12:02:59 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655978578; x=1657792979; bh=uCJEQ0saxLFHqhveDp4s4mwDy5tM5bM241r5VS6o+64=; b=aqGAiY5A674H MydOvm2feijxm1lwZ+EiuAc9EF5a4chbXBguZW6+fuhdzQmHMAEvsKey4B35J7n5 ZFwYravm4TwIL0dKLTygGQpcXw40VSsEWmvM6yOItxdFN2covPfsPLf/F8T1P1g5 5ncPrZVcdbvofDMUdc5cyKElwXfYE7Y= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id fwARwxsZCqNA for ; Thu, 23 Jun 2022 12:02:58 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Thu, 23 Jun 2022 12:02:58 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Thu, 23 Jun 2022 12:02:57 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-asset. Date: Thu, 23 Jun 2022 12:02:44 +0200 Message-ID: <20220623100244.22801-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26972.006 X-TM-AS-Result: No-10--2.917500-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCyOQOsE4nDCdPlRTIgxjQatsUh +OkaOhpfUw0vW6kjZOsign5HsLTCTw+spnTDuewNvTnqYKYXTRuuLFZZYlisfHxPMjOKY7A+6vV BUUydJCsRB0bsfrpPI34T9cYMsdwxhGhfR74nzL5qp1rjwHBPP+KuM5xlDE6sVKYA0tJK8N8jIJ GilWbDSViu2QOBfgp6JY5XNSf6IwG2g14s5hSvaSNooWs0d4X/cUke23u350xU7OJY7bdPeD9iv /sJMsVc7Oyi/ulxQeKUgZdIaXg4f X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.917500-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26972.006 X-TM-SNTS-SMTP: 99DFD223A827A9FCFB738030B8838CB2BC00CC91FC3BA254D896756F63115E2D2002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-asset): New variable. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..98e7ee104d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,32 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-asset + (package + (name "r-asset") + (version "2.14.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ASSET" version)) + (sha256 + (base32 + "029acl5k9d4hnvy3jia9cr4rk6w31zn8b5s79i6lazq1cp236hbg")))) + (properties `((upstream-name . "ASSET"))) + (build-system r-build-system) + (propagated-inputs (list r-mass r-msm r-rmeta)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/ASSET") + (synopsis + "Subset-based association analysis of heterogeneous traits and subtypes") + (description + "This package is an @code{R} programme for the subset-based analysis of +heterogeneous traits and disease subtypes. @code{ASSET} allows the user to +search through all possible subsets of z-scores to identify the subset of traits +giving the best meta-analyzed z-score. Further, it returns a p-value adjusting +for the multiple-testing involved in the search. It also allows for searching +for the best combination of disease subtypes associated with each variant.") + (license license:gpl2))) + (define-public r-biocversion (package (name "r-biocversion") base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 -- 2.36.1 From debbugs-submit-bounces@debbugs.gnu.org Mon Oct 31 16:41:38 2022 Received: (at 56159-done) by debbugs.gnu.org; 31 Oct 2022 20:41:39 +0000 Received: from localhost ([127.0.0.1]:41981 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opbbG-0001ZQ-NC for submit@debbugs.gnu.org; Mon, 31 Oct 2022 16:41:38 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21197) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opbbF-0001ZI-4S for 56159-done@debbugs.gnu.org; Mon, 31 Oct 2022 16:41:37 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1667248895; cv=none; d=zohomail.com; s=zohoarc; b=Bn11PL6ShOzs80EgPZPc7OwXhE+8kwS3QUFzXQTs9mVIEDKGIfopbGjBKdbFRYo4DcW5SHNgv6RuRp6hCOudxbCK7D67PlsdTOSU6dQOeBfOg7HFTU7PMX3l4gU2UkScPDmmNSXBhymxonhyCwzWrmztIHvKOtFUrCiSnrmYO6U= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1667248895; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=Ky0H1GoblWgdzfl+glJT2pYHoLqIo584vJX0p7DcYh8+3XyrxdlApleP8F3tSEQBXv5/k7pZe5EUHd2+SkoZhygUchviYsf6SAHWs5E7gtP59uK15i+6K6S9hzfpEDQ1Q3GuXhg8KlvppDWp3lheS4R2AfeBr+kjXWOvI5v/UFQ= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1667248895; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=VHZJICALtmRm+oMAyYNXr68IAPqK3s0Yn/wuyFoXOB/oLemsEI1E5dSO7D1+WaMw AhuwWVtERBHM9kXfLq5omQtIBsri9fCYJJBu4Y/VoeJ5fWwoiElvrI/Wc5/M9f33dTf 47JVowcPtvkizvFe0rEH2375r+qTsmpd+TbfhdHA= Received: from localhost (155-111-142-46.pool.kielnet.net [46.142.111.155]) by mx.zohomail.com with SMTPS id 1667248893583526.8572544729041; Mon, 31 Oct 2022 13:41:33 -0700 (PDT) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 56159-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-asset. 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