GNU bug report logs - #56143
[PATCH] gnu: Add r-asgsca.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#56143: closed ([PATCH] gnu: Add r-asgsca.)
Date: Mon, 31 Oct 2022 20:43:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#56143: [PATCH] gnu: Add r-asgsca.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 56143 <at> debbugs.gnu.org.

-- 
56143: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56143
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 56143-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-asgsca.
Date: Mon, 31 Oct 2022 21:42:35 +0100

Applied, thanks!

-- 
Ricardo

[Message part 3 (message/rfc822, inline)]

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-asgsca.
Date: Wed, 22 Jun 2022 16:07:05 +0200

* gnu/packages/bioconductor.scm (r-asgsca): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..fba3004e8d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,30 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-asgsca
+  (package
+    (name "r-asgsca")
+    (version "1.30.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "ASGSCA" version))
+              (sha256
+               (base32
+                "0mxrrkm2lg7gxjh8ynn6qmryn8wqda7b83sr51dpgblay83jcbaq"))))
+    (properties `((upstream-name . "ASGSCA")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-mass r-matrix))
+    (home-page "https://bioconductor.org/packages/ASGSCA")
+    (synopsis
+     "Analysis of the associations between multiple genotypes and multiple traits")
+    (description
+     "The package @dfn{ASGSCA} (Association Study using Generalized Structured
+Component Analysis) provides tools to model and test the association between
+multiple genotypes and multiple traits, taking into account the prior biological
+knowledge.  Genes, and clinical pathways are incorporated in the model as latent
+variables.")
+    (license license:gpl3)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
-- 
2.36.1

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