From debbugs-submit-bounces@debbugs.gnu.org Wed Jun 22 10:07:28 2022 Received: (at submit) by debbugs.gnu.org; 22 Jun 2022 14:07:28 +0000 Received: from localhost ([127.0.0.1]:36189 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o410y-0002CS-DZ for submit@debbugs.gnu.org; Wed, 22 Jun 2022 10:07:28 -0400 Received: from lists.gnu.org ([209.51.188.17]:40098) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o410w-0002CH-6j for submit@debbugs.gnu.org; Wed, 22 Jun 2022 10:07:26 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:53872) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o410w-0001Zu-1u for guix-patches@gnu.org; Wed, 22 Jun 2022 10:07:26 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:50413) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o410t-0002ID-4Z for guix-patches@gnu.org; Wed, 22 Jun 2022 10:07:25 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id 42A3F160364 for ; Wed, 22 Jun 2022 16:07:19 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655906838; x=1657721239; bh=NJqo9tGY5NPyDqYmca4P9/OB0HCCtXVc1pn3NE5Gwek=; b=XKAXxBua7jK4 BUaJC+7jdQ7Yz1gZ46uV0zZwVetARYdH205pwLd4bnMw1P2u27bkZOZ7vet1Sd8k i+qrc+uMDyjcSd1K6MrF21qg1syrkjfmUMczghgws7DzvyON5eQPYsXMR6ecUDgS ynIqUXNiFANSfm1V/A8128IOZCr9FAY= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id yjLWS2CobBgT for ; Wed, 22 Jun 2022 16:07:18 +0200 (CEST) Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Wed, 22 Jun 2022 16:07:18 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Wed, 22 Jun 2022 16:07:17 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-asgsca. Date: Wed, 22 Jun 2022 16:07:05 +0200 Message-ID: <20220622140705.17936-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26970.005 X-TM-AS-Result: No-10--8.875400-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCxSHjB5Y+o5ZMHl2k6qtJaKikr G1hD2mz+GsZX0q3FpiOhAZQXEXXZuCxH+nTDZ1NOrm7DrUlmNkIAy6p60ZV62fJ5/bZ6npdjKay T/BQTiGmOyIFxsyFI09iVAS/XmlGp4JxSSp5DePHOvGt34Ha9uSi4YmhKLG2Q= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--8.875400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26970.005 X-TM-SNTS-SMTP: 4E4384476E1D8A06C9F3C79FDBC81ADF69445DA2EB7F6B1D3E8B7951795786C12002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-asgsca): New variable. --- gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..fba3004e8d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,30 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-asgsca + (package + (name "r-asgsca") + (version "1.30.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ASGSCA" version)) + (sha256 + (base32 + "0mxrrkm2lg7gxjh8ynn6qmryn8wqda7b83sr51dpgblay83jcbaq")))) + (properties `((upstream-name . "ASGSCA"))) + (build-system r-build-system) + (propagated-inputs (list r-mass r-matrix)) + (home-page "https://bioconductor.org/packages/ASGSCA") + (synopsis + "Analysis of the associations between multiple genotypes and multiple traits") + (description + "The package @dfn{ASGSCA} (Association Study using Generalized Structured +Component Analysis) provides tools to model and test the association between +multiple genotypes and multiple traits, taking into account the prior biological +knowledge. Genes, and clinical pathways are incorporated in the model as latent +variables.") + (license license:gpl3))) + (define-public r-biocversion (package (name "r-biocversion") base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 -- 2.36.1 From debbugs-submit-bounces@debbugs.gnu.org Mon Oct 31 16:42:58 2022 Received: (at 56143-done) by debbugs.gnu.org; 31 Oct 2022 20:42:58 +0000 Received: from localhost ([127.0.0.1]:41998 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opbcY-0001cV-JP for submit@debbugs.gnu.org; Mon, 31 Oct 2022 16:42:58 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21121) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opbcV-0001cM-FC for 56143-done@debbugs.gnu.org; Mon, 31 Oct 2022 16:42:57 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1667248973; cv=none; d=zohomail.com; s=zohoarc; b=QTblhKAtxOHFL3kpWyu3eAiBT4XVgqorhRCI8m2ho9zK1PYEvzpdAd7JaOawnoHdq2yDaUW6pfAUcXKDHV1i6Hq8tnW3JzODntw0gxcRFQU8d8aNOhIYzgQF/arKxJ+C/yOUlXkSOYNFj4Mir34IfATPlMBxUBXWZzBHtZeuMKo= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1667248973; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=LAQT4CnTa7GVe+f3JnfG79KOpji/vHcdajfDZXug8vOht9lVRUv7nf/m89wB5rXYATE/Si8WZoQYp4P8vS4uLpLtPmmSG7i3RiT8oNaOdFhtte4VDK9lX6hN17jtDkjYGSWvT0H9nx7yolMpbQnWq6dbq1qg+x6I1iM7Vco9Zo8= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1667248973; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=hlF6PVsN8/Bl5eVVjvG31kDge7wkX3GmvtWLHc50Wkn1WSXqOKot8lnl4r4HvG08 A+xxxEKbRQFcq43udMIwbziEBG+ZH9MVLoTXZRwmEx1HrKLWJ1Y7wlUarFlABkraIS/ Lmv2U0fqq7a0j4g9hz/SUsm3yhH2zIuIvZYIT3dc= Received: from localhost (155-111-142-46.pool.kielnet.net [46.142.111.155]) by mx.zohomail.com with SMTPS id 1667248972120306.0856844847119; Mon, 31 Oct 2022 13:42:52 -0700 (PDT) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 56143-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-asgsca. 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