GNU bug report logs - #56142
[PATCH] gnu: Add r-aseb.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#56142: closed ([PATCH] gnu: Add r-aseb.)
Date: Mon, 31 Oct 2022 20:47:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#56142: [PATCH] gnu: Add r-aseb.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 56142 <at> debbugs.gnu.org.

-- 
56142: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56142
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 56142-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-aseb.
Date: Mon, 31 Oct 2022 21:45:47 +0100

Applied, thanks!

-- 
Ricardo

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-aseb.
Date: Wed, 22 Jun 2022 15:57:41 +0200

* gnu/packages/bioconductor.scm (r-aseb): New variable.
---
 gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..f961d201d2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,32 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-aseb
+  (package
+    (name "r-aseb")
+    (version "1.40.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "ASEB" version))
+              (sha256
+               (base32
+                "1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p"))))
+    (properties `((upstream-name . "ASEB")))
+    (build-system r-build-system)
+    (home-page "https://bioconductor.org/packages/ASEB")
+    (synopsis "Predict acetylated lysine sites")
+    (description
+     "@code{ASEB} is an R package to predict lysine sites that can be acetylated
+by a specific @dfn{KAT}-family (K-acetyl-transferases).  Lysine acetylation is
+a well-studied posttranslational modification on kinds of proteins.  About four
+thousand lysine acetylation sites and over 20 lysine KATs have been identified.
+However, which KAT is responsible for a given protein or lysine site acetylation
+is mostly unknown.  In this package, we use a @dfn{GSEA}-like (Gene Set Enrichment
+Analysis) method to make predictions.  GSEA method was developed and successfully
+used to detect coordinated expression changes and find the putative functions
+of the long non-coding RNAs.")
+    (license license:gpl3+)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
-- 
2.36.1

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