GNU bug report logs - #56040
[PATCH] gnu: Add r-antiprofiles.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#56040: closed (Re: [bug#56040] [PATCH] gnu: Add r-antiprofiles.)
Date: Fri, 01 Jul 2022 08:27:02 +0000

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Your bug report

#56040: [PATCH] gnu: Add r-antiprofiles.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 56040 <at> debbugs.gnu.org.

-- 
56040: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56040
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 56040-done <at> debbugs.gnu.org
Subject: Re: [bug#56040] [PATCH] gnu: Add r-antiprofiles.
Date: Fri, 01 Jul 2022 10:25:59 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..1eacd863de 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,32 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-antiprofiles

Thanks.  I applied it with a commit message.

-- 
Ricardo

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-antiprofiles.
Date: Fri, 17 Jun 2022 16:24:15 +0200

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..1eacd863de 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,32 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-antiprofiles
+  (package
+    (name "r-antiprofiles")
+    (version "1.36.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "antiProfiles" version))
+              (sha256
+               (base32
+                "1277kg5xpyb2yriyjy18p437q5lj22h4al7z7pygkzxzywxv9g40"))))
+    (properties `((upstream-name . "antiProfiles")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-locfit
+           r-matrixstats))
+    (home-page "https://github.com/HCBravoLab/antiProfiles")
+    (synopsis "Implementation of gene expression anti-profiles")
+    (description
+     "This package implements the gene expression anti-profiles method.
+Anti-profiles are a new approach for developing cancer genomic signatures that
+specifically take advantage of gene expression heterogeneity.  They explicitly
+model increased gene expression variability in cancer to define robust and
+reproducible gene expression signatures capable of accurately distinguishing
+tumor samples from healthy controls.")
+    (license license:artistic2.0)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: d6bd483cd53cedc8da39fcc6c419f7241080ed21
-- 
2.36.1

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