GNU bug report logs - #56036
[PATCH] gnu: Add r-anf.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#56036: closed ([PATCH] gnu: Add r-anf.)
Date: Fri, 01 Jul 2022 08:26:02 +0000

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Your message dated Fri, 01 Jul 2022 10:25:14 +0200
with message-id <875ykh8cjr.fsf <at> elephly.net>
and subject line Re: [bug#56036] [PATCH] gnu: Add r-anf.
has caused the debbugs.gnu.org bug report #56036,
regarding [PATCH] gnu: Add r-anf.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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56036: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56036
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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-anf.
Date: Fri, 17 Jun 2022 11:53:47 +0200

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..abdca11897 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,34 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-anf
+  (package
+    (name "r-anf")
+    (version "1.18.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "ANF" version))
+              (sha256
+               (base32
+                "1fa2pbdapymrpz01ws0m2fbzf11d723x6rbsys29v06is57f5lpj"))))
+    (properties `((upstream-name . "ANF")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biobase
+           r-igraph
+           r-mass
+           r-rcolorbrewer
+           r-survival))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/ANF")
+    (synopsis "Affinity network fusion for complex patient clustering")
+    (description
+     "The package @dfn{ANF}(Affinity Network Fusion) provides methods for affinity
+matrix construction and fusion as well as spectral clustering.  This package is
+used for complex patient clustering by integrating multi-omic data through affinity
+network fusion.")
+    (license license:gpl3)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
-- 
2.36.1

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 56036-done <at> debbugs.gnu.org
Subject: Re: [bug#56036] [PATCH] gnu: Add r-anf.
Date: Fri, 01 Jul 2022 10:25:14 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..abdca11897 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,34 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-anf

Thanks.  I applied it with a commit message.

-- 
Ricardo

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