From unknown Sun Jun 22 07:46:53 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#56036] [PATCH] gnu: Add r-anf. Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Fri, 17 Jun 2022 09:55:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 56036 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 56036@debbugs.gnu.org Cc: rekado@elephly.net X-Debbugs-Original-To: X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by submit@debbugs.gnu.org id=B.165545965210028 (code B ref -1); Fri, 17 Jun 2022 09:55:02 +0000 Received: (at submit) by debbugs.gnu.org; 17 Jun 2022 09:54:12 +0000 Received: from localhost ([127.0.0.1]:43790 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o28g7-0002bg-Mr for submit@debbugs.gnu.org; Fri, 17 Jun 2022 05:54:11 -0400 Received: from lists.gnu.org ([209.51.188.17]:38170) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o28g3-0002bW-Vv for submit@debbugs.gnu.org; Fri, 17 Jun 2022 05:54:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41570) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o28g2-0007O6-4K for guix-patches@gnu.org; Fri, 17 Jun 2022 05:54:06 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:57989) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o28fz-0002H1-Gp for guix-patches@gnu.org; Fri, 17 Jun 2022 05:54:05 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id 81510A02C2 for ; Fri, 17 Jun 2022 11:53:59 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655459638; x=1657274039; bh=AaD1ppvjVKz22MQBoAIF46H/PjtwFq7x0ZdSzEHnyhI=; b=mgS2X7BOE8bE nAOf6/GFXuamgANSBzx4pc6x9jsQIChlyT7qX7x3HpFufOiCiXaCALmKeOmQhIMF Urgw9K1/8rgK1P7e2Mu9zJEnOBnTApK1qBEOYKLQUcBVJ/4N3bI3kuwl8ujWhLVm 5RVg50dZNXS+TNkACoBIDm2wOYBwdi4= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id cZQZtkmkCaF8 for ; Fri, 17 Jun 2022 11:53:58 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Fri, 17 Jun 2022 11:53:58 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Fri, 17 Jun 2022 11:53:58 +0200 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Fri, 17 Jun 2022 11:53:47 +0200 Message-ID: <20220617095347.3429-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26960.007 X-TM-AS-Result: No-10--6.350400-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTncu0i9VlgrN6hF4zyLyne+ATJDl9FKHbrn7fZJfDdCIXPo1 c6H9DbojwkwY92nLGuXj0Sbso8/33pXlm91Fv1Ip194/5X9VfCxSHjB5Y+o5ZOuLH9BII+4qrKs axUiN/ynF+KCpGE37CJsoi2XrUn/J8m+hzBStantdY+ZoWiLIm8K21zBg2KlfyMdyHKes7lsDcT 3S2AjZ/2trbY5XuhGDwab84nDTAXyHbG7aZA19aA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.350400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26960.007 X-TM-SNTS-SMTP: 1A6619E1A9274F906E304DCBF0A1642F25B52558247F4FD506EFF9B7B5B348642002:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..abdca11897 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,34 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-anf + (package + (name "r-anf") + (version "1.18.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ANF" version)) + (sha256 + (base32 + "1fa2pbdapymrpz01ws0m2fbzf11d723x6rbsys29v06is57f5lpj")))) + (properties `((upstream-name . "ANF"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase + r-igraph + r-mass + r-rcolorbrewer + r-survival)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/ANF") + (synopsis "Affinity network fusion for complex patient clustering") + (description + "The package @dfn{ANF}(Affinity Network Fusion) provides methods for affinity +matrix construction and fusion as well as spectral clustering. This package is +used for complex patient clustering by integrating multi-omic data through affinity +network fusion.") + (license license:gpl3))) + (define-public r-biocversion (package (name "r-biocversion") base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb -- 2.36.1 From unknown Sun Jun 22 07:46:53 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Subject: bug#56036: closed (Re: [bug#56036] [PATCH] gnu: Add r-anf.) Message-ID: References: <875ykh8cjr.fsf@elephly.net> <20220617095347.3429-1-madalinionel.patrascu@mdc-berlin.de> X-Gnu-PR-Message: they-closed 56036 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 56036@debbugs.gnu.org Date: Fri, 01 Jul 2022 08:26:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1656663962-4643-1" This is a multi-part message in MIME format... ------------=_1656663962-4643-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #56036: [PATCH] gnu: Add r-anf. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 56036@debbugs.gnu.org. --=20 56036: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D56036 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1656663962-4643-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 56036-done) by debbugs.gnu.org; 1 Jul 2022 08:25:52 +0000 Received: from localhost ([127.0.0.1]:36174 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o7ByJ-0001C2-Kz for submit@debbugs.gnu.org; Fri, 01 Jul 2022 04:25:51 -0400 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21079) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o7By4-0001Bh-PK for 56036-done@debbugs.gnu.org; Fri, 01 Jul 2022 04:25:50 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1656663934; cv=none; d=zohomail.com; s=zohoarc; b=A6JGjBQRhBRdftBx6+gni5O2g7sbRPOozWLZt968LaSj23Qi5jrHm0ecqDBStlLER0YAeOHZMm9I3DbFQeo/M/S4pjWyryOerICbVAyJL8v6AmS0ZObV79Pt/k0s3JPozP+3gYrDwg46zeANFgdeudQ0R/sh9l1GEbMiPZ/nRTM= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1656663934; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=EEEBjGdLHTVIBUjCh+3l68wnWe18D8+vMIUwo9MKbzQ=; b=DAUzgTT+HHf8TRjVaAlUQAPoGdUhf2+KC6cAyI6VerQLb0kc6vzdKcGNeYRTX0vRrZT9lzeMQUCBiLRl1wVNLnV3WCgd9cT7CvfSP1mgJT0S4TB9i51HfWIQZDfFgAQBPXoL+gf4+BwrpkJyvHSv0cPBbWoPX0DZID530fC2TwU= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1656663934; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=EEEBjGdLHTVIBUjCh+3l68wnWe18D8+vMIUwo9MKbzQ=; b=Tp73NGIhSe6rJH5s2Jii2eT+YURzshqBYTFk23cAE+oLFN6tbqEXrGj0NeFnYeVE QtcKN2ICSYFPVbvEVFuhPutZYx50ji7bUkO1ui1X5mtLvx2TIdNVOzY9baNuj5LlMKW pR8UKpNv87969hCKEiVGAtSHMcTMJi0KyjWs86qU= Received: from localhost (72-109-142-46.pool.kielnet.net [46.142.109.72]) by mx.zohomail.com with SMTPS id 1656663931112596.7721738015196; Fri, 1 Jul 2022 01:25:31 -0700 (PDT) References: <20220617095347.3429-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.6.11; emacs 28.1 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#56036] [PATCH] gnu: Add r-anf. Date: Fri, 01 Jul 2022 10:25:14 +0200 In-reply-to: <20220617095347.3429-1-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <875ykh8cjr.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 56036-done Cc: 56036-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm > index 1e87b190c2..abdca11897 100644 > --- a/gnu/packages/bioconductor.scm > +++ b/gnu/packages/bioconductor.scm > @@ -2029,6 +2029,34 @@ (define-public r-aneufinder > sequencing data.") > (license license:artistic2.0))) >=20=20 > +(define-public r-anf Thanks. I applied it with a commit message. --=20 Ricardo ------------=_1656663962-4643-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 17 Jun 2022 09:54:12 +0000 Received: from localhost ([127.0.0.1]:43790 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o28g7-0002bg-Mr for submit@debbugs.gnu.org; Fri, 17 Jun 2022 05:54:11 -0400 Received: from lists.gnu.org ([209.51.188.17]:38170) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o28g3-0002bW-Vv for submit@debbugs.gnu.org; Fri, 17 Jun 2022 05:54:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41570) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o28g2-0007O6-4K for guix-patches@gnu.org; Fri, 17 Jun 2022 05:54:06 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:57989) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o28fz-0002H1-Gp for guix-patches@gnu.org; Fri, 17 Jun 2022 05:54:05 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id 81510A02C2 for ; Fri, 17 Jun 2022 11:53:59 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655459638; x=1657274039; bh=AaD1ppvjVKz22MQBoAIF46H/PjtwFq7x0ZdSzEHnyhI=; b=mgS2X7BOE8bE nAOf6/GFXuamgANSBzx4pc6x9jsQIChlyT7qX7x3HpFufOiCiXaCALmKeOmQhIMF Urgw9K1/8rgK1P7e2Mu9zJEnOBnTApK1qBEOYKLQUcBVJ/4N3bI3kuwl8ujWhLVm 5RVg50dZNXS+TNkACoBIDm2wOYBwdi4= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id cZQZtkmkCaF8 for ; Fri, 17 Jun 2022 11:53:58 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Fri, 17 Jun 2022 11:53:58 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Fri, 17 Jun 2022 11:53:58 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-anf. 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(license license:artistic2.0))) +(define-public r-anf + (package + (name "r-anf") + (version "1.18.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ANF" version)) + (sha256 + (base32 + "1fa2pbdapymrpz01ws0m2fbzf11d723x6rbsys29v06is57f5lpj")))) + (properties `((upstream-name . "ANF"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase + r-igraph + r-mass + r-rcolorbrewer + r-survival)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/ANF") + (synopsis "Affinity network fusion for complex patient clustering") + (description + "The package @dfn{ANF}(Affinity Network Fusion) provides methods for affinity +matrix construction and fusion as well as spectral clustering. This package is +used for complex patient clustering by integrating multi-omic data through affinity +network fusion.") + (license license:gpl3))) + (define-public r-biocversion (package (name "r-biocversion") base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb -- 2.36.1 ------------=_1656663962-4643-1--