GNU bug report logs - #56035
[PATCH] gnu: Add r-anaquin.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#56035: closed ([PATCH] gnu: Add r-anaquin.)
Date: Fri, 01 Jul 2022 08:26:01 +0000

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Your message dated Fri, 01 Jul 2022 10:24:31 +0200
with message-id <87a69t8cki.fsf <at> elephly.net>
and subject line Re: [bug#56035] [PATCH] gnu: Add r-anaquin.
has caused the debbugs.gnu.org bug report #56035,
regarding [PATCH] gnu: Add r-anaquin.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
56035: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56035
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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-anaquin.
Date: Fri, 17 Jun 2022 11:42:01 +0200

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..2b7f736dfa 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,36 @@ (define-public r-agimicrorna
 objects are used so that other packages could be used as well.")
     (license license:gpl3)))
 
+(define-public r-anaquin
+  (package
+    (name "r-anaquin")
+    (version "2.20.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "Anaquin" version))
+              (sha256
+               (base32
+                "1jgpnls2djl1yzvnk64qc83mljmlci7wflwkza3wr0sv6r47b0dd"))))
+    (properties `((upstream-name . "Anaquin")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-deseq2
+           r-ggplot2
+           r-knitr
+           r-locfit
+           r-plyr
+           r-qvalue
+           r-rocr))
+    (native-inputs (list r-knitr))
+    (home-page "https://www.sequinstandards.com/")
+    (synopsis "Statistical analysis of sequins")
+    (description
+     "The project is intended to support the use of @dfn{sequins}(synthetic
+sequencing spike-in controls) owned and made available by the Garvan Institute
+of Medical Research.  The goal is to provide a standard open source library for
+quantitative analysis, modelling and visualization of spike-in controls.")
+    (license license:bsd-3)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
-- 
2.36.1

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 56035-done <at> debbugs.gnu.org
Subject: Re: [bug#56035] [PATCH] gnu: Add r-anaquin.
Date: Fri, 01 Jul 2022 10:24:31 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..2b7f736dfa 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1987,6 +1987,36 @@ (define-public r-agimicrorna
>  objects are used so that other packages could be used as well.")
>      (license license:gpl3)))
>  
> +(define-public r-anaquin

Thanks.  I applied it with a commit message.

-- 
Ricardo

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