From debbugs-submit-bounces@debbugs.gnu.org Fri Jun 17 05:42:27 2022 Received: (at submit) by debbugs.gnu.org; 17 Jun 2022 09:42:27 +0000 Received: from localhost ([127.0.0.1]:43775 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o28Ul-00006s-E6 for submit@debbugs.gnu.org; Fri, 17 Jun 2022 05:42:27 -0400 Received: from lists.gnu.org ([209.51.188.17]:32786) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o28Uj-00006k-JM for submit@debbugs.gnu.org; Fri, 17 Jun 2022 05:42:26 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:38692) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o28Uj-0003IH-9f for guix-patches@gnu.org; Fri, 17 Jun 2022 05:42:25 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:49891) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o28Ud-00040L-Ti for guix-patches@gnu.org; Fri, 17 Jun 2022 05:42:24 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id F12A6300139 for ; Fri, 17 Jun 2022 11:42:14 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655458934; x=1657273335; bh=JWosO94U8XYQHymeaiJW+RdyXLMcjyJV16xg4lccvpU=; b=AoKEc96m3BXK SKRtWNMXJcWcG0pac7GlXNiVl/hFcPPbKy5jmry3NVYHzv8nnb5h0k9fZ+dhEpmw OsX5JKl81WJZVliaTB4wSvZmg9GyTlHvsnrscR625xlYJ2jI2BWcE1e6i0flsVtA TeF56ED3AqHiJKzOenvzbtTZvIJdB+4= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id TccvlCu6R9tM for ; Fri, 17 Jun 2022 11:42:14 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Fri, 17 Jun 2022 11:42:14 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Fri, 17 Jun 2022 11:42:13 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-anaquin. Date: Fri, 17 Jun 2022 11:42:01 +0200 Message-ID: <20220617094201.2256-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26960.006 X-TM-AS-Result: No-10--1.073000-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiIu0i9VlgrN6hF4zyLyne+ATJDl9FKHbrn7fZJfDdCIXPo1 c6H9DbojwkwY92nLGuXj0Sbso8/33uxl9HNVJWpcP5D/UDx64xEXjfR3d0weRsay5jJvrxqMHM3 FqPbBhw7QO8N3zW+4PoTeetu/hakbk6AYSaDLmp8MPOZL2X19igK0ZgbTOeKUyiLz1Vtc/pWYDT IhMw3OOX0tCKdnhB58I/9UW5M5dRNp7qEhmmPgy/cUt5lc1lLgKIzdZS3ou0U3MNoumqIlQ9SQY IT6WNxvTxfGslD1vJkFEhAVXs+GW1ZH1S2BDVPly8ZLe1N3wujCSXLcC7vHYQVI8wLHR16ecJit LnKp88pZKCalsVmcQjWQPYq1JOarY9u3lK2/Yrn87HRNT0KLkg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.073000-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26960.006 X-TM-SNTS-SMTP: D334C9595F34B49588FE37E12ED573ACAC63287B4534212465783BDE8BD3CCFA2002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..2b7f736dfa 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1987,6 +1987,36 @@ (define-public r-agimicrorna objects are used so that other packages could be used as well.") (license license:gpl3))) +(define-public r-anaquin + (package + (name "r-anaquin") + (version "2.20.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "Anaquin" version)) + (sha256 + (base32 + "1jgpnls2djl1yzvnk64qc83mljmlci7wflwkza3wr0sv6r47b0dd")))) + (properties `((upstream-name . "Anaquin"))) + (build-system r-build-system) + (propagated-inputs + (list r-deseq2 + r-ggplot2 + r-knitr + r-locfit + r-plyr + r-qvalue + r-rocr)) + (native-inputs (list r-knitr)) + (home-page "https://www.sequinstandards.com/") + (synopsis "Statistical analysis of sequins") + (description + "The project is intended to support the use of @dfn{sequins}(synthetic +sequencing spike-in controls) owned and made available by the Garvan Institute +of Medical Research. The goal is to provide a standard open source library for +quantitative analysis, modelling and visualization of spike-in controls.") + (license license:bsd-3))) + (define-public r-aneufinder (package (name "r-aneufinder") base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb -- 2.36.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Jul 01 04:25:11 2022 Received: (at 56035-done) by debbugs.gnu.org; 1 Jul 2022 08:25:11 +0000 Received: from localhost ([127.0.0.1]:36171 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o7Bxf-0001B9-B8 for submit@debbugs.gnu.org; Fri, 01 Jul 2022 04:25:11 -0400 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21061) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o7Bxd-0001Ax-J2 for 56035-done@debbugs.gnu.org; Fri, 01 Jul 2022 04:25:10 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1656663907; cv=none; d=zohomail.com; s=zohoarc; b=JcYs9vgsl967tDD+LI4CjbKuCgP7GE6zL6t+bdky4ol5RNEzRfXtFsifZsTEy1hCbk3h3tTJlZAk7AQ/TnuPhbHPgUCLxSTsL6uWS6Ey0f+i/hBN+Bj5qQe3jYLtSBrXdrulIs9lgfHYQ+rYMjbQaZ5AcloJgCpQg/2OS76yAdY= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1656663907; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=3SiyHWhqnVHh8+DKfb0rIhvI0lKZen7kV65O5LFLW1o=; b=G5CYDL+wHLNI1Nh0AFKawPiZdkN7Qn4uNIkAxb8/7ChS0j3uT+PuftT4rKvV1E7NsKwap6Kee7/2L5cuYbCYiTVICYQeo0WfvGo1S3jLId/QRQUHE1NqC1KYMG1A29TsqfjmP0tbjpn/QHm4RWeIzMGYoQGrdqvLEEHmawBPNRg= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1656663907; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=3SiyHWhqnVHh8+DKfb0rIhvI0lKZen7kV65O5LFLW1o=; b=TTtxsztmJFFKjlwS1I3LwhP1kjevjnoacoIVwI4KkOEX61IOrtJJhjNeRoOqagqa v/s99tMfO6ExvwXr2Xmw2tBLsWLd79wns0Iuk5++CKH3f3DdLd/Ot0vdIxdA/FnRIV6 BNn28ZF42Dls6OhIbFrP8ipkZDWIJmUoHCDCSZAA= Received: from localhost (72-109-142-46.pool.kielnet.net [46.142.109.72]) by mx.zohomail.com with SMTPS id 1656663904596437.47067521766417; Fri, 1 Jul 2022 01:25:04 -0700 (PDT) References: <20220617094201.2256-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.6.11; emacs 28.1 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#56035] [PATCH] gnu: Add r-anaquin. Date: Fri, 01 Jul 2022 10:24:31 +0200 In-reply-to: <20220617094201.2256-1-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87a69t8cki.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 56035-done Cc: 56035-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm > index 1e87b190c2..2b7f736dfa 100644 > --- a/gnu/packages/bioconductor.scm > +++ b/gnu/packages/bioconductor.scm > @@ -1987,6 +1987,36 @@ (define-public r-agimicrorna > objects are used so that other packages could be used as well.") > (license license:gpl3))) >=20=20 > +(define-public r-anaquin Thanks. I applied it with a commit message. --=20 Ricardo From unknown Fri Jun 20 20:03:35 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 29 Jul 2022 11:24:06 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator