GNU bug report logs - #56033
[PATCH] gnu: Add r-amountain.

Previous Next

Full log

View this message in rfc822 format

From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#56033: closed (Re: [bug#56033] [PATCH] gnu: Add r-amountain.)
Date: Thu, 30 Jun 2022 13:32:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#56033: [PATCH] gnu: Add r-amountain.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 56033 <at> debbugs.gnu.org.

-- 
56033: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56033
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 56033-done <at> debbugs.gnu.org
Subject: Re: [bug#56033] [PATCH] gnu: Add r-amountain.
Date: Thu, 30 Jun 2022 15:30:37 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioconductor.scm (r-amountain): New variable.

Applied.  Thanks for the patch!

-- 
Ricardo

[Message part 3 (message/rfc822, inline)]

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-amountain.
Date: Fri, 17 Jun 2022 11:09:20 +0200

* gnu/packages/bioconductor.scm (r-amountain): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..4fc7949c75 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,30 @@ (define-public r-agimicrorna
 objects are used so that other packages could be used as well.")
     (license license:gpl3)))
 
+(define-public r-amountain
+  (package
+    (name "r-amountain")
+    (version "1.22.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AMOUNTAIN" version))
+              (sha256
+               (base32
+                "0vdfabsrisdd7qq28f5ivd0v8zz49szqn677i5lhwnlaix220c54"))))
+    (properties `((upstream-name . "AMOUNTAIN")))
+    (build-system r-build-system)
+    (inputs (list gsl))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/AMOUNTAIN")
+    (synopsis "Modules for multilayer weighted gene co-expression networks")
+    (description
+     "This package provides a pure data-driven gene network, @dfn{WGCN}(weighted
+gene co-expression network) could be constructed only from expression profile.
+Different layers in such networks may represent different time points, multiple
+conditions or various species.  @code{AMOUNTAIN} aims to search active modules
+in multi-layer WGCN using a continuous optimization approach.")
+    (license license:gpl2+)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
-- 
2.36.1

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.