From debbugs-submit-bounces@debbugs.gnu.org Fri Jun 17 05:09:54 2022 Received: (at submit) by debbugs.gnu.org; 17 Jun 2022 09:09:54 +0000 Received: from localhost ([127.0.0.1]:43692 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o27zG-0007e0-Dh for submit@debbugs.gnu.org; Fri, 17 Jun 2022 05:09:54 -0400 Received: from lists.gnu.org ([209.51.188.17]:43870) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o27zD-0007dr-9d for submit@debbugs.gnu.org; Fri, 17 Jun 2022 05:09:52 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:60564) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o27zD-0006iO-4m for guix-patches@gnu.org; Fri, 17 Jun 2022 05:09:51 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:57371) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o27z5-0005CN-4k for guix-patches@gnu.org; Fri, 17 Jun 2022 05:09:50 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id 4267A1602FD for ; Fri, 17 Jun 2022 11:09:39 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655456978; x=1657271379; bh=Y/aqIo/R9+d/SPQZ0yP0eT/majVtUPOATlzl+zHmCC0=; b=WjjahwXP35Cv jMBVwUsiE+OYaII2BlwukgZuEPDoAe0C2bj6WSmfAAgcPfGOImF/t6MAV+xFtK1U mTbkWlJHqWtpDrORmY9t22JusV+1Ymp6yyNRwsAHkM73NSSEs/YJikmeJSFOrIVJ GGQkCe73U7csYoi56scECNE/TQ3T66Y= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id tb-B0i0UWwWW for ; Fri, 17 Jun 2022 11:09:38 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Fri, 17 Jun 2022 11:09:38 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Fri, 17 Jun 2022 11:09:37 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-amountain. Date: Fri, 17 Jun 2022 11:09:20 +0200 Message-ID: <20220617090920.32056-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26960.006 X-TM-AS-Result: No-10--6.885600-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCxSHjB5Y+o5ZPwNtclzTGDI9wt Pc2egeGytqGuCAKROQVuiAzktwBmxKz8U6m7mv8DGL//8mlodA+uLFZZYlisfHxPMjOKY7A8Lbi gRnpKlKTpcQTtiHDgWxtfK1xYNDj/4F7Jnt/s/gvbBwmDo9oF8GQSbJYXr6rjgLIc3KON32A== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.885600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26960.006 X-TM-SNTS-SMTP: 16E985B9F073D785B1E72CA53F8FD708B70C8406CD1CD36BCC45423FF1DF49FA2002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01, T_SPF_HELO_TEMPERROR=0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-amountain): New variable. --- gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..4fc7949c75 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1987,6 +1987,30 @@ (define-public r-agimicrorna objects are used so that other packages could be used as well.") (license license:gpl3))) +(define-public r-amountain + (package + (name "r-amountain") + (version "1.22.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AMOUNTAIN" version)) + (sha256 + (base32 + "0vdfabsrisdd7qq28f5ivd0v8zz49szqn677i5lhwnlaix220c54")))) + (properties `((upstream-name . "AMOUNTAIN"))) + (build-system r-build-system) + (inputs (list gsl)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AMOUNTAIN") + (synopsis "Modules for multilayer weighted gene co-expression networks") + (description + "This package provides a pure data-driven gene network, @dfn{WGCN}(weighted +gene co-expression network) could be constructed only from expression profile. +Different layers in such networks may represent different time points, multiple +conditions or various species. @code{AMOUNTAIN} aims to search active modules +in multi-layer WGCN using a continuous optimization approach.") + (license license:gpl2+))) + (define-public r-aneufinder (package (name "r-aneufinder") base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb -- 2.36.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 30 09:31:09 2022 Received: (at 56033-done) by debbugs.gnu.org; 30 Jun 2022 13:31:09 +0000 Received: from localhost ([127.0.0.1]:33694 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o6uGC-0007EY-W5 for submit@debbugs.gnu.org; Thu, 30 Jun 2022 09:31:09 -0400 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21093) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o6uG7-0007EG-17 for 56033-done@debbugs.gnu.org; Thu, 30 Jun 2022 09:31:06 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1656595860; cv=none; d=zohomail.com; s=zohoarc; b=Wp8UvLy7GyI1ke3CfnOpaWW/x3lUlsDUZkaVpNHbk9pH1Oh6iS6mpv1QC/bdyID0MdkaVCpqRDHeC8pgvcJ8T/Mq1kRMfG6lp1uC7iH4sAkJ0dgZfx3xYLv2IAcFeZzMmidV4xQC3vIpAyl98Y/90M1vLPVG/5+J7VvLQ8CFAVo= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1656595860; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=1L1oERbfEw2KUEQYDXPlIE6zcuA6bp8EkIQ4Yc8WrTM=; b=L9e+hyS7ibYrKwj7SvCsmY1mcwQbkibvizZmcf8izgWtalOgjzw17u/KLVKELrBLO0pcAk3G0A4lxCe0zpFRDWeZyS4tevRUcJhH4y6DcWiQR847JedJy2e84d42eRpeIndGoDlkRvuqcwskQFlxjen4AF6CytrOO/29pleamjs= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1656595860; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=1L1oERbfEw2KUEQYDXPlIE6zcuA6bp8EkIQ4Yc8WrTM=; b=B54Q3X55uRAm0jDKl0b/MiwlIfe9HbEXZTMFXkIs3Mywlt5//2LPISJq1HYZ4me4 /A92EUcULUjOfiNvOD1vW1wqCb5FIBg7fjDAOtzi67KjYSj85so/UGejPbpxCXCgwtC IIkZ93jlsEZ5E0QlNIk/yU84l9+Zwi8qiHbAq98o= Received: from localhost (72-109-142-46.pool.kielnet.net [46.142.109.72]) by mx.zohomail.com with SMTPS id 1656595858527968.4962956426845; Thu, 30 Jun 2022 06:30:58 -0700 (PDT) References: <20220617090920.32056-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.6.11; emacs 28.1 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#56033] [PATCH] gnu: Add r-amountain. Date: Thu, 30 Jun 2022 15:30:37 +0200 In-reply-to: <20220617090920.32056-1-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87r1368ei8.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 56033-done Cc: 56033-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/bioconductor.scm (r-amountain): New variable. Applied. Thanks for the patch! --=20 Ricardo From unknown Thu Jun 19 14:05:34 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 29 Jul 2022 11:24:06 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator