From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 16 12:17:17 2022 Received: (at submit) by debbugs.gnu.org; 16 Jun 2022 16:17:17 +0000 Received: from localhost ([127.0.0.1]:42964 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o1sBJ-0005MV-Fk for submit@debbugs.gnu.org; Thu, 16 Jun 2022 12:17:17 -0400 Received: from lists.gnu.org ([209.51.188.17]:51320) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o1sBH-0005Kl-HJ for submit@debbugs.gnu.org; Thu, 16 Jun 2022 12:17:15 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:39064) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o1sBF-0000ub-Q1 for guix-patches@gnu.org; Thu, 16 Jun 2022 12:17:15 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:40701) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o1sBD-0001rs-36 for guix-patches@gnu.org; Thu, 16 Jun 2022 12:17:13 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id 4774BA02FD for ; Thu, 16 Jun 2022 18:17:07 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655396226; x=1657210627; bh=r/x9gUrr/f/dDvyiTZ+kTliSMXGe7UExzmG8Zwo6Zgc=; b=VZ4PbQnXhMPD HmSxSwvI7cWzDEerYYLZyAOTUkI1YDG17BNj+9z2kDV3whgXrQZX6BCLvFDON/hv wsFSdv76fGYF1RS8rj0+KmbhVlQka9pB+q2ewzsjAQTCJtiVtmfxL5hVVTFiCgW/ 4HWRq9UQDnzxaKHVg3dOC54McejSKCA= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id wim3SRXcaJjm for ; Thu, 16 Jun 2022 18:17:06 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Thu, 16 Jun 2022 18:17:06 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Thu, 16 Jun 2022 18:17:05 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-alevinqc. Date: Thu, 16 Jun 2022 18:16:50 +0200 Message-ID: <20220616161650.25148-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26958.007 X-TM-AS-Result: No-10--4.700000-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6rIGj0lq6L0YXjfR3d0weRswHSQ+yXjTDZ/S mwZqazWzhdgvNa1pTT8ign5HsLTCTw+spnTDuewOrm7DrUlmNkIAy6p60ZV62fJ5/bZ6npdjKay T/BQTiGj9FMMFmEfcezR5Dw1rSgeP0T+n1rOu0+Xi3qb4U5+FeH6ZgI60j3U3Flv8xnfUWvA+ap ZKrdqx3GkZLZOP4TBEwEEPHAq3uTi24H4xRId62tOdWe/Uk/vuwZO9kmaWWvP8+E8vSQCkfySOb 56URxsg= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.700000-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26958.007 X-TM-SNTS-SMTP: 0B4AFB425FBED062B0EA09AA4A484BB4F080639EE315D7CB9A804E82E92DC9542002:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-alevinqc): New variable. --- gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..f5057ff362 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1987,6 +1987,40 @@ (define-public r-agimicrorna objects are used so that other packages could be used as well.") (license license:gpl3))) +(define-public r-alevinqc + (package + (name "r-alevinqc") + (version "1.12.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "alevinQC" version)) + (sha256 + (base32 + "0g75qnz7ah0widdjn99lhvnacz38vgl9j86n65wyswsf413hz3bb")))) + (properties `((upstream-name . "alevinQC"))) + (build-system r-build-system) + (propagated-inputs + (list r-cowplot + r-dplyr + r-dt + r-ggally + r-ggplot2 + r-rcpp + r-rjson + r-rlang + r-rmarkdown + r-shiny + r-shinydashboard + r-tximport)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/csoneson/alevinQC") + (synopsis "Quality control reports for @code{Alevin} output") + (description + "The package @code{r-alevinqc} generates quality control reports summarizing +the output from an @code{alevin} run. The reports can be generated as html or +pdf files, or as shiny applications.") + (license license:expat))) + (define-public r-aneufinder (package (name "r-aneufinder") base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb -- 2.36.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Nov 24 09:32:50 2022 Received: (at 56022-done) by debbugs.gnu.org; 24 Nov 2022 14:32:50 +0000 Received: from localhost ([127.0.0.1]:57818 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oyDHW-0006Sa-E1 for submit@debbugs.gnu.org; Thu, 24 Nov 2022 09:32:50 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21130) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oyDHU-0006SR-CH for 56022-done@debbugs.gnu.org; Thu, 24 Nov 2022 09:32:49 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1669300366; cv=none; d=zohomail.com; s=zohoarc; b=DHjN/newsz6k1goKnbTw5bs0VmeCZUJ8SAoEM4GPUQLx2XXqqjL5Ie23fB73L2sHLV1mJFq54Y7sY+vznBUri1Kad1c/Ltey4B6RF13VO/Kx2zEwrcuxup8LfLpm/twh7mv0AIo4cBLjoO+wjoNsAOp1iIMnxO4WJw7KKqxfQWI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1669300366; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=6ez5pj5MfDPkYZwhnpb1z8bAnurjXe0nPeIiOzPlKRQ=; b=lf9BkN4Mi3zKXJw5WIFZGc46mhtT/oA7U6qIlGjWaNXy/jjOYlu0gSC3PjjwvJoHA8QAC/LIZlONesC7i2TcC5qaLdAUzpEClolr5yf/EUQm53gSUcr3sZznLtSCDjPSDO9krMi+r8GUGrNsejPidZdaoY4cZsOdUs6pT2UNjVQ= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1669300366; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=6ez5pj5MfDPkYZwhnpb1z8bAnurjXe0nPeIiOzPlKRQ=; b=a87/vxxf8jj+xjJXCBk4xlOsEQiAm0f8nK3Ye2oDmj9BefxSOrbQ76fUIPDb4KSh 37X15ILjrRmtTpqhlcBwyxO46ejYBHkUH8UhtWe+5re2KFkrLYVzQqkmjKvu2zSz4BB oO+DrKo476meqNpgMEstnSH3ra2/5h/KT1WewNtE= Received: from localhost (145-109-142-46.pool.kielnet.net [46.142.109.145]) by mx.zohomail.com with SMTPS id 1669300364902984.1811884873614; Thu, 24 Nov 2022 06:32:44 -0800 (PST) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 56022-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-alevinqc. Date: Thu, 24 Nov 2022 15:31:18 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87cz9co22d.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 56022-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied and updated, thanks! -- Ricardo From unknown Sat Jun 21 05:13:41 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. 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