From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 16 11:55:26 2022 Received: (at submit) by debbugs.gnu.org; 16 Jun 2022 15:55:26 +0000 Received: from localhost ([127.0.0.1]:42935 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o1rq9-0000eP-Tq for submit@debbugs.gnu.org; Thu, 16 Jun 2022 11:55:26 -0400 Received: from lists.gnu.org ([209.51.188.17]:56670) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o1rq7-0000eH-EO for submit@debbugs.gnu.org; Thu, 16 Jun 2022 11:55:24 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:33876) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o1rq7-0000fM-3g for guix-patches@gnu.org; Thu, 16 Jun 2022 11:55:23 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:37405) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1o1rq4-0004UV-KI for guix-patches@gnu.org; Thu, 16 Jun 2022 11:55:22 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id 84C77A02FB for ; Thu, 16 Jun 2022 17:55:02 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= mime-version:content-type:content-type:content-language :accept-language:message-id:date:date:subject:subject:from:from :received:received:received:received; s=mdc; t=1655394901; x= 1657209302; bh=6OKTDzsWCTJKGAJIPs2N4BBueuwUdmxziAvSVV1KSNs=; b=m w803LoMaugSVL0oc+5t6SXNOR6N4JL1FPN9EG7ClRvfn+duxwm5m2J5pQh+H8Cx/ 1T+r9JfpP8kYyvPmB9KtsKUCGIX1z0hlqb0zMyjYBT7r6nMorpoFAFpW+i3eYOEg mmwC8H6EeYE6SgroUx1Z3XyKxz7mLeQsAXvz5sblWI= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 8IjHjw6zQosG for ; Thu, 16 Jun 2022 17:55:01 +0200 (CEST) Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Thu, 16 Jun 2022 17:55:01 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Thu, 16 Jun 2022 17:55:01 +0200 Received: from SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a]) by SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a%2]) with mapi id 15.01.2507.009; Thu, 16 Jun 2022 17:55:01 +0200 From: "MadalinIonel.Patrascu@mdc-berlin.de" To: "guix-patches@gnu.org" Subject: gnu: Add r-nada, r-zcompositions, r-aldex2. Thread-Topic: Add r-nada, r-zcompositions, r-aldex2. Thread-Index: AQHYgZld8+zlwxKiDk2w+TTwHycYZg== Date: Thu, 16 Jun 2022 15:55:01 +0000 Message-ID: Accept-Language: en-US, de-DE Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.52] x-tm-as-product-ver: SMEX-14.0.0.3092-9.0.1002-26958.007 x-tm-as-result: No-10--13.884400-5.000000 x-tmase-matchedrid: a3KJLn6RIiKfkHSWeTTytMG0UNgaZpYqGsvgUMYAn4UWzPTbxO7R+tIS YzBUt2RaXVsEWVqYqaivJcrLMYkA70UuXkWTSi/R30kDaWZBE1RU4sxFq6igEUqa6TyhyXvPtAg K4TtXrP1GUsVNd0mL6QC2F/gPANDtCdtCev19Y1LZ6cd1XW8QucogYxpm9PTbAs7f5tvs5+iEIc UVoa0/oH0tCKdnhB58dcD5PxhxmQOrtiDzTp2cZbVQu1GNZ+sicxYeVrfi/UIwFcMc/z9LyiNP3 GgHWnHTxW42GFSRkgAy4x/CSM274X7cGd19dSFd x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--13.884400-5.000000 x-tmase-version: SMEX-14.0.0.3092-9.0.1002-26958.007 x-tm-snts-smtp: 6592FAF618938756058695E0F2FD13B168B67517C4D484BB8E9B6A038A12A1402002:F Content-Type: multipart/alternative; boundary="_000_c88b9d89c0af48c5816bfcef153381f3mdcberlinde_" MIME-Version: 1.0 Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -28 X-Spam_score: -2.9 X-Spam_bar: -- X-Spam_report: (-2.9 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, HTML_MESSAGE=0.001, MIME_HTML_MOSTLY=0.1, PYZOR_CHECK=1.392, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) --_000_c88b9d89c0af48c5816bfcef153381f3mdcberlinde_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable --_000_c88b9d89c0af48c5816bfcef153381f3mdcberlinde_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable


--_000_c88b9d89c0af48c5816bfcef153381f3mdcberlinde_-- From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 16 11:57:46 2022 Received: (at 56021) by debbugs.gnu.org; 16 Jun 2022 15:57:46 +0000 Received: from localhost ([127.0.0.1]:42942 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o1rsQ-0000hx-AR for submit@debbugs.gnu.org; Thu, 16 Jun 2022 11:57:46 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:59007) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o1rsN-0000hc-8m for 56021@debbugs.gnu.org; Thu, 16 Jun 2022 11:57:45 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id CE8511602FD for <56021@debbugs.gnu.org>; Thu, 16 Jun 2022 17:57:37 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1655395057; x=1657209458; bh=BvftzInu5hDYcaR81+RjCREzBuFoRzW3Xn0 nDyf+24w=; b=qoV+IovVlKJR1XtYGdwvO0YX9W7fPsIFANCIKwxFmxR4DYIJTJp jOxHWdkeR1RHDF1voZXsmS+L8TgRu5p7GnRsRfMxM2aajfK004l2y0Iwlx7sOTTZ lk5uR1QsnV2s7350dRfIFmW7mLIOB1xMRk7+vm7hGvl0FDcqeNGiDq+U= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id zkSzD8QrEAZP for <56021@debbugs.gnu.org>; Thu, 16 Jun 2022 17:57:37 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for <56021@debbugs.gnu.org>; Thu, 16 Jun 2022 17:57:37 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Thu, 16 Jun 2022 17:57:35 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <56021@debbugs.gnu.org> Subject: [PATCH 2/3] gnu: Add r-zcompositions. Date: Thu, 16 Jun 2022 17:57:20 +0200 Message-ID: <20220616155721.23547-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 In-Reply-To: <20220616155721.23547-1-madalinionel.patrascu@mdc-berlin.de> References: <20220616155721.23547-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26958.007 X-TM-AS-Result: No-10--4.214400-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6pyd7XCgr5tcSwak5eNXy+6Y5ZGw7wyeHPNh MoIUJiCIZjraH8rGmfVQgiThZnRmDjh6UpEWMa1LgyusN8bViiBDkv2q7d+VDlwV2iaAfSWcURS Scn+QSXt0H8LFZNFG7doMssNsUwYVGoOsFd1OizS5YZOEMBUBsgyXgFJqS2qvWhgZjALNnHs+g+ Ga4BAcMC3UIZvv8PwNS9gbaHiYkmsZ/upop1w2NCNXjWCKcB47HpeHdXLjLb473WzsXAufzELZr sYgA6obyh3JNelCjdRkfAFx3Dn4y X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.214400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26958.007 X-TM-SNTS-SMTP: C0445BFDDCBD4CA1AAF56E50644471B8E7576035BCFB0DB0EBB3ADD3B42D2CA22002:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 56021 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-zcompositions): New variable. --- gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 28cd2e7fad..945cb5bdce 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -836,6 +836,37 @@ (define-public r-dlm known as Dynamic Linear Models.") (license license:gpl2+))) +(define-public r-zcompositions + (package + (name "r-zcompositions") + (version "1.4.0-1") + (source (origin + (method url-fetch) + (uri (cran-uri "zCompositions" version)) + (sha256 + (base32 + "1rrhja9iaq123r2gqw1bzrn1ri0s3z4wzq8p0sfcr1yb6pv13vik")))) + (properties `((upstream-name . "zCompositions"))) + (build-system r-build-system) + (propagated-inputs + (list r-mass + r-nada + r-truncnorm)) + (home-page "https://github.com/Japal/zCompositions") + (synopsis + "Treatment of zeros, left-censored and missing values in compositional data") + (description + "This package @code{zCompositions} is an @code{R} package for the imputation +of left-censored data under a compositional approach. The implemented methods +consider aspects of relevance for a compositional approach such as scale +invariance, subcompositional coherence or preserving the multivariate relative +structure of the data. Based on solid statistical frameworks, it comprises the +ability to deal with single and varying censoring thresholds, consistent treatment +of closed and non-closed data, exploratory tools, multiple imputation, @dfn{MCMC} +(Markov Chain Monte Carlo), robust and non-parametric alternatives, and recent +proposals for count data.") + (license license:gpl2+))) + (define-public r-zoo (package (name "r-zoo") -- 2.36.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 16 11:57:47 2022 Received: (at 56021) by debbugs.gnu.org; 16 Jun 2022 15:57:47 +0000 Received: from localhost ([127.0.0.1]:42944 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o1rsQ-0000i5-Nf for submit@debbugs.gnu.org; Thu, 16 Jun 2022 11:57:47 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:50129) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o1rsO-0000hf-0M for 56021@debbugs.gnu.org; Thu, 16 Jun 2022 11:57:45 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id 8E660160304 for <56021@debbugs.gnu.org>; Thu, 16 Jun 2022 17:57:38 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1655395057; x=1657209458; bh=GZFt1MbwOPSpPLHyHaawaKjcLCYO5JVrlyL G90SjITA=; b=PfUVJ09q/EzVXLTTFhBwqBnp38eWY8XROVgYHmVuNdMtOtJXsDg ZcwalEzYa7MH84JRVpCmesG8Qgr78yIbQUniXU/kecr3+oHYyDHmQxfwUPxvMZYN 7A5LsZw2mQzqhkxr1ztWjh2VF7zm+q7Rqufnzl1ZjuMQfVGSSXYZLXkQ= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id wf9LdgFI3d0x for <56021@debbugs.gnu.org>; Thu, 16 Jun 2022 17:57:37 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for <56021@debbugs.gnu.org>; Thu, 16 Jun 2022 17:57:37 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Thu, 16 Jun 2022 17:57:35 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <56021@debbugs.gnu.org> Subject: [PATCH 3/3] gnu: Add r-aldex2. Date: Thu, 16 Jun 2022 17:57:21 +0200 Message-ID: <20220616155721.23547-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 In-Reply-To: <20220616155721.23547-1-madalinionel.patrascu@mdc-berlin.de> References: <20220616155721.23547-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26958.007 X-TM-AS-Result: No-10--0.286500-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2v/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCxSHjB5Y+o5ZEyi1T9AUgUbsUh +OkaOhpfN57BJxyhEO3wBfyL06jKAmv0Xhs8HK808o3fwIs8rQQwMqNovfwOoaGL2D7wHkbXizy 75l6H5qX0tCKdnhB589yM15V5aWpj6C0ePs7A07ba607moR85RKzQhmWmrAKFISmIp7fCMIURQi Zjlai/4Yoani0CN60UElhXQWrfGQLdTLbLmr7KW7krrHdP6mXxDNMCPzHf5Y95nfdZUf8KIdAnz xkc/wOO+Yl/q6i1mnv1mO1iYLJDqT4cbBIKMuHq+68HqACCvKA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.286500-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26958.007 X-TM-SNTS-SMTP: 1388152BD02AA69B6028D12098BE6B695F2BEB632E64CD7B466FD7E57173F6D52002:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 56021 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/bioconductor.scm (r-aldex2): New variable. --- gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..3abd57359d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1987,6 +1987,48 @@ (define-public r-agimicrorna objects are used so that other packages could be used as well.") (license license:gpl3))) +(define-public r-aldex2 + (package + (name "r-aldex2") + (version "1.28.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ALDEx2" version)) + (sha256 + (base32 + "0xppx52sllbz4pli174422i4kkf37v0yl844088nbj3j9r6pfbj9")))) + (properties `((upstream-name . "ALDEx2"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocparallel + r-genomicranges + r-iranges + r-multtest + r-rfast + r-s4vectors + r-summarizedexperiment + r-zcompositions)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/ggloor/ALDEx_bioc") + (synopsis + "Analysis Of differential abundance taking sample variation into account") + (description + "This package provides a differential abundance analysis for the comparison +of two or more conditions. Useful for analyzing data from standard RNA-seq or +meta-RNA-seq assays as well as selected and unselected values from in-vitro +sequence selections. Uses a Dirichlet-multinomial model to infer abundance from +counts, optimized for three or more experimental replicates. The method infers +biological and sampling variation to calculate the expected false discovery +rate, given the variation, based on a Wilcoxon Rank Sum test and Welch's t-test +(via aldex.ttest), a Kruskal-Wallis test (via aldex.kw), a generalized linear +model (via aldex.glm), or a correlation test (via aldex.corr). All tests report +p-values and Benjamini-Hochberg corrected p-values. ALDEx2 also calculates +expected standardized effect sizes for paired or unpaired study designs.") + ;; The code for the function "rdirichlet" which is from the "R" package + ;; "mc2d_0.1-14.tar.gz", which is denoted as GPL>=2, and where the tar-ball + ;; LICENSE specifies GPL-3. + (license (list license:agpl3+ license:gpl2+ license:gpl3)))) + (define-public r-aneufinder (package (name "r-aneufinder") -- 2.36.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 16 11:57:50 2022 Received: (at 56021) by debbugs.gnu.org; 16 Jun 2022 15:57:50 +0000 Received: from localhost ([127.0.0.1]:42946 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o1rsU-0000iM-2d for submit@debbugs.gnu.org; Thu, 16 Jun 2022 11:57:50 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:47613) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1o1rsN-0000hZ-8J for 56021@debbugs.gnu.org; Thu, 16 Jun 2022 11:57:46 -0400 Received: from localhost (localhost [127.0.0.1]) by b2062.mx.srv.dfn.de (Postfix) with ESMTP id 0B7201602F1 for <56021@debbugs.gnu.org>; Thu, 16 Jun 2022 17:57:37 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1655395056; x=1657209457; bh=Pw86DTXd5xzY7VH2w9KDPxPsiHX6HuaIqAW5VtVHce4=; b=m9n+qP2uF3vk aVx6Wtnqc7fDI5moDlANWOI7iW/D52Z2A/FPzSDlIQDbcOenUrvsdbKrot8LFvIp 7o5z8WMerN6aXslx4fSSeBPHaAtkyY2h464Hvlf/SHvZcPSSdBOcI4dr8LM/JsFq HemA92fnvni8BBYGYe2fBKQeswQUh3M= Received: from b2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-tub.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id bjNRsQytbZwk for <56021@debbugs.gnu.org>; Thu, 16 Jun 2022 17:57:36 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS for <56021@debbugs.gnu.org>; Thu, 16 Jun 2022 17:57:36 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.9; Thu, 16 Jun 2022 17:57:35 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <56021@debbugs.gnu.org> Subject: [PATCH 1/3] gnu: Add r-nada. Date: Thu, 16 Jun 2022 17:57:19 +0200 Message-ID: <20220616155721.23547-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26958.007 X-TM-AS-Result: No-10--4.704400-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEGhf Cbk4OLdme9miqIT5hkfuNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5r4qCLIu0mtIP+aPQT1cxlGqbs +nJ/tFJGGsZX0q3FpiOhAZQXEXXZuLJutez2dKWfi8zVgXoAltuJ5hXsnxp7jC24oEZ6SpSk6XE E7Yhw4Fnu0HBZjeylwSobWRQohS+njgcCxJmpzgqD2LWxmuihunY0d9Ww/8uvNrYsjt5omHfJfu AXJyiQ6a6jGHtmLVl8mmWGFLZYZI98iatREjfpDE8nb9DwdQ4C2jbSab1pg0UjxFpwn53SOfhj5 CZkmSyI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.704400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26958.007 X-TM-SNTS-SMTP: FC81E3582F3EF159CBD153215D57204D4554CC824A7F4895F1BBE65CBD7DCFC22002:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 56021 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-nada): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b326332bf6..28cd2e7fad 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -27881,6 +27881,26 @@ (define-public r-nabor to speed up repeated queries of the same set of target points.") (license license:bsd-3))) +(define-public r-nada + (package + (name "r-nada") + (version "1.6-1.1") + (source (origin + (method url-fetch) + (uri (cran-uri "NADA" version)) + (sha256 + (base32 + "0jp4mqr77cx7q5lff84s6wb0dwjy9mi0jyhbjc5fsx50bdczc3v7")))) + (properties `((upstream-name . "NADA"))) + (build-system r-build-system) + (propagated-inputs (list r-survival)) + (home-page "https://cran.r-project.org/package=NADA") + (synopsis "Nondetects and data analysis for environmental data") + (description + "This package contains methods described by Dennis Helsel in his book +@emph{Nondetects and Data Analysis: Statistics for Censored Environmental Data}.") + (license license:gpl2+))) + (define-public r-naturalsort (package (name "r-naturalsort") base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb -- 2.36.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Nov 04 07:56:32 2022 Received: (at 56021-done) by debbugs.gnu.org; 4 Nov 2022 11:56:32 +0000 Received: from localhost ([127.0.0.1]:51986 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oqvJH-0001qC-Re for submit@debbugs.gnu.org; Fri, 04 Nov 2022 07:56:32 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21101) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1oqvJG-0001q2-DO for 56021-done@debbugs.gnu.org; Fri, 04 Nov 2022 07:56:30 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1667562988; cv=none; d=zohomail.com; s=zohoarc; b=e35mAHlGvEoB1tVDbXrKvr48EPtIR90YmDlH96LQlORWAmRiqyu2wJa1J15V+pbmMiS93sXl/GR49k2Fw2obipcWnc3Yf0EwyWZas3D3AG5lBvRcT9AYn0a6oKBWix0/8IbXyr5tQGF1hhhHzZjDea9RLX79kDv53nwm5TB3yDU= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1667562988; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=UdBOxbTlYk5MB5jRwSnN4Szh4DPZjyEBLlgPGHMRvbuz4gXspenU9hnhRQDRMF/8lkza0GfuERo4xN+F8mwCSO4BUlWNFZlwNfTWJFOUDdSUJZIbcy1aq9JkPJDcswvywUXtBGPPtGVmmFJBIapK17v1DF81cvYXQh/aa20C9gI= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1667562988; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=UKvYV9jIOS/b+WDXO/bF8VyzBNP0FiNfMkTLuJ6xRcaypVvajeK3maMRfXs8Iy/s vJ07uEip8sSMVJVLeKdX5LWFCGbxChkV+KUedLsjDg+B+uXry3Uyhde1FsRX3nPpFg+ sYHSp6frS94nUpF8Ohgo/qNTM7V71SaaDg1hy0lI= Received: from localhost (34-111-142-46.pool.kielnet.net [46.142.111.34]) by mx.zohomail.com with SMTPS id 1667562987089530.0146926167891; Fri, 4 Nov 2022 04:56:27 -0700 (PDT) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 56021-done@debbugs.gnu.org Subject: gnu: Add r-nada, r-zcompositions, r-aldex2. Date: Fri, 04 Nov 2022 12:56:09 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87bkpn53x3.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 56021-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thank you! -- Ricardo From unknown Sun Jun 22 08:06:15 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. 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