GNU bug report logs - #55298
[PATCH 0/1] Do not propagate cwltool inputs.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Arun Isaac <arunisaac <at> systemreboot.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#55298: closed ([PATCH 0/1] Do not propagate cwltool inputs.)
Date: Wed, 11 May 2022 05:31:01 +0000

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Your message dated Wed, 11 May 2022 11:00:29 +0530
with message-id <87zgjo3abu.fsf <at> systemreboot.net>
and subject line Re: bug#55298: [PATCH 0/1] Do not propagate cwltool inputs.
has caused the debbugs.gnu.org bug report #55298,
regarding [PATCH 0/1] Do not propagate cwltool inputs.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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From: Arun Isaac <arunisaac <at> systemreboot.net>
To: guix-patches <at> gnu.org
Cc: Arun Isaac <arunisaac <at> systemreboot.net>
Subject: [PATCH 0/1] Do not propagate cwltool inputs.
Date: Sat,  7 May 2022 15:04:43 +0530

cwltool is a command-line tool, not a python library. So, its dependencies
should be regular inputs, not propagated inputs. In fact, as it stands
currently, installing cwltool fails due to a package conflict.

--8<---------------cut here---------------start------------->8---
$ guix install cwltool
The following package would be installed:
   cwltool 3.1.20220119140128

guix install: error: profile contains conflicting entries for python-rdflib
guix install: error:   first entry: python-rdflib <at> 5.0.0 /gnu/store/lxy384l7avd0q4dmfs0zywllb9221y7x-python-rdflib-5.0.0
guix install: error:    ... propagated from python-prov <at> 2.0.0
guix install: error:    ... propagated from cwltool <at> 3.1.20220119140128
guix install: error:   second entry: python-rdflib <at> 6.1.1 /gnu/store/2f88f2w44zsvmx8m6ymp1fywiw1h379x-python-rdflib-6.1.1
guix install: error:    ... propagated from python-rdflib-jsonld <at> 0.6.2
guix install: error:    ... propagated from python-schema-salad <at> 8.2.20211116214159
guix install: error:    ... propagated from cwltool <at> 3.1.20220119140128
hint: You cannot have two different versions or variants of `cwltool' in the same profile.
--8<---------------cut here---------------end--------------->8---

Arun Isaac (1):
  gnu: cwltool: Do not propagate inputs.

 gnu/packages/bioinformatics.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

-- 
2.36.0

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From: Arun Isaac <arunisaac <at> systemreboot.net>
To: Ludovic Courtès <ludo <at> gnu.org>
Cc: 55298-done <at> debbugs.gnu.org
Subject: Re: bug#55298: [PATCH 0/1] Do not propagate cwltool inputs.
Date: Wed, 11 May 2022 11:00:29 +0530

> You forgot to send the actual patch,

Oops, sorry!

> but I think removing propagated inputs in this case is a good idea.
> Got for it!

Done, thank you!

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