From unknown Tue Jun 17 21:53:27 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#55298 <55298@debbugs.gnu.org> To: bug#55298 <55298@debbugs.gnu.org> Subject: Status: [PATCH 0/1] Do not propagate cwltool inputs. Reply-To: bug#55298 <55298@debbugs.gnu.org> Date: Wed, 18 Jun 2025 04:53:27 +0000 retitle 55298 [PATCH 0/1] Do not propagate cwltool inputs. reassign 55298 guix-patches submitter 55298 Arun Isaac severity 55298 normal tag 55298 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Sat May 07 05:34:59 2022 Received: (at submit) by debbugs.gnu.org; 7 May 2022 09:34:59 +0000 Received: from localhost ([127.0.0.1]:50470 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nnGq3-0005GC-7k for submit@debbugs.gnu.org; Sat, 07 May 2022 05:34:59 -0400 Received: from lists.gnu.org ([209.51.188.17]:45366) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nnGq2-0005G5-0U for submit@debbugs.gnu.org; Sat, 07 May 2022 05:34:58 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:45534) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nnGq1-0000et-Pq for guix-patches@gnu.org; Sat, 07 May 2022 05:34:57 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:35836) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nnGpy-0002HW-F2 for guix-patches@gnu.org; Sat, 07 May 2022 05:34:57 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: Message-Id:Date:Subject:Cc:To:From:Sender:Reply-To:Content-Type:Content-ID: Content-Description:Resent-Date:Resent-From:Resent-Sender:Resent-To:Resent-Cc :Resent-Message-ID:In-Reply-To:References:List-Id:List-Help:List-Unsubscribe: List-Subscribe:List-Post:List-Owner:List-Archive; bh=pI2R/TjhNTO8SKVKYHJoPmMpTIrEE29LAHnRksq+yI8=; b=HGfFoCdwBCY5ZlR9CPRVrOywWQ yLS9VaKHkmwcZiTZYVE5G03To1cx2v2DgWGub1/oKI6hVAPTfWX6pyhfQmYk9XvBrjTWm/t8BoQcg drvx1hxHhei0ao8VpwC7jo/2uijGFvv1LaD65dCha/FET6Kct5OJQE72tcMYH3j5tdRe5KVvGnAMY b42Kxk+W0rj8RLHSiAd1fW72VGiiS7M5m+xNUSwWH+PYvMiFmqfKCPOKaH1ISisX+mkDVV6uuO2C4 /Gg5XOQFO451TFUZQSxfIbLXzRc9FnTbSCUqDs5s2EGD9B2IrofWVKJj/IBXRTwzX6Q6WNHqYv5VU FwdqmU4g==; Received: from [192.168.2.1] (port=2824 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.95) (envelope-from ) id 1nnGpq-00054H-6U; Sat, 07 May 2022 15:04:46 +0530 From: Arun Isaac To: guix-patches@gnu.org Subject: [PATCH 0/1] Do not propagate cwltool inputs. Date: Sat, 7 May 2022 15:04:43 +0530 Message-Id: <20220507093443.4214-1-arunisaac@systemreboot.net> X-Mailer: git-send-email 2.36.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=139.59.75.54; envelope-from=arunisaac@systemreboot.net; helo=mugam.systemreboot.net X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: Arun Isaac X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) cwltool is a command-line tool, not a python library. So, its dependencies should be regular inputs, not propagated inputs. In fact, as it stands currently, installing cwltool fails due to a package conflict. --8<---------------cut here---------------start------------->8--- $ guix install cwltool The following package would be installed: cwltool 3.1.20220119140128 guix install: error: profile contains conflicting entries for python-rdflib guix install: error: first entry: python-rdflib@5.0.0 /gnu/store/lxy384l7avd0q4dmfs0zywllb9221y7x-python-rdflib-5.0.0 guix install: error: ... propagated from python-prov@2.0.0 guix install: error: ... propagated from cwltool@3.1.20220119140128 guix install: error: second entry: python-rdflib@6.1.1 /gnu/store/2f88f2w44zsvmx8m6ymp1fywiw1h379x-python-rdflib-6.1.1 guix install: error: ... propagated from python-rdflib-jsonld@0.6.2 guix install: error: ... propagated from python-schema-salad@8.2.20211116214159 guix install: error: ... propagated from cwltool@3.1.20220119140128 hint: You cannot have two different versions or variants of `cwltool' in the same profile. --8<---------------cut here---------------end--------------->8--- Arun Isaac (1): gnu: cwltool: Do not propagate inputs. gnu/packages/bioinformatics.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) -- 2.36.0 From debbugs-submit-bounces@debbugs.gnu.org Tue May 10 18:48:57 2022 Received: (at 55298) by debbugs.gnu.org; 10 May 2022 22:48:57 +0000 Received: from localhost ([127.0.0.1]:35379 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1noYf3-00010I-En for submit@debbugs.gnu.org; Tue, 10 May 2022 18:48:57 -0400 Received: from eggs.gnu.org ([209.51.188.92]:54668) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1noYez-000101-9o for 55298@debbugs.gnu.org; Tue, 10 May 2022 18:48:56 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:55226) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1noYes-00073o-OX; Tue, 10 May 2022 18:48:46 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:In-Reply-To:Date:References:Subject:To: From; bh=BMXkRc2VPAtLLlX5tnRuFz5NuXge7j9hc/2DGNr2uiE=; b=nBdHIUhVd/Kg+sELa4qh YdW691zICNVHGmph2o7lL3sL0km6lWkPeYXWwQNuKjkWMVZx9OSi40s8XqDKY28bwJ3JAaUDlF4sz 09cVXi7klj+6NlxkqaQZX+zqlbgdjy+/G1In2QJ6IolLwz1anAdA/Rx5FKC+StzZmXLiKY31nsgtE nSqCICagA6G6bDAuq6SrmC7hPr0drMQzpfIbbcAKG+T2+K6YBjykJa34a+iSloOrWXUC1v4ZaXV70 JcAiEh/4j85Hz2o3UMduNY3liZ4lvROfXq8BmhyJL6YiCYn1uTyss72jJqggo05JooigM1uiTCHkJ Aamu81cxwIMBSg==; Received: from 91-160-117-201.subs.proxad.net ([91.160.117.201]:53222 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1noYes-00053d-Ai; Tue, 10 May 2022 18:48:46 -0400 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: Arun Isaac Subject: Re: bug#55298: [PATCH 0/1] Do not propagate cwltool inputs. References: <20220507093443.4214-1-arunisaac@systemreboot.net> Date: Wed, 11 May 2022 00:48:45 +0200 In-Reply-To: <20220507093443.4214-1-arunisaac@systemreboot.net> (Arun Isaac's message of "Sat, 7 May 2022 15:04:43 +0530") Message-ID: <87a6bpovg2.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 55298 Cc: 55298@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hi, Arun Isaac skribis: > cwltool is a command-line tool, not a python library. So, its dependencies > should be regular inputs, not propagated inputs. In fact, as it stands > currently, installing cwltool fails due to a package conflict. > > $ guix install cwltool > The following package would be installed: > cwltool 3.1.20220119140128 > > guix install: error: profile contains conflicting entries for python-rdfl= ib > guix install: error: first entry: python-rdflib@5.0.0 /gnu/store/lxy384= l7avd0q4dmfs0zywllb9221y7x-python-rdflib-5.0.0 > guix install: error: ... propagated from python-prov@2.0.0 > guix install: error: ... propagated from cwltool@3.1.20220119140128 > guix install: error: second entry: python-rdflib@6.1.1 /gnu/store/2f88f= 2w44zsvmx8m6ymp1fywiw1h379x-python-rdflib-6.1.1 > guix install: error: ... propagated from python-rdflib-jsonld@0.6.2 > guix install: error: ... propagated from python-schema-salad@8.2.20211= 116214159 > guix install: error: ... propagated from cwltool@3.1.20220119140128 > hint: You cannot have two different versions or variants of `cwltool' in = the same profile. > > Arun Isaac (1): > gnu: cwltool: Do not propagate inputs. > > gnu/packages/bioinformatics.scm | 2 +- > 1 file changed, 1 insertion(+), 1 deletion(-) You forgot to send the actual patch, but I think removing propagated inputs in this case is a good idea. Got for it! Thanks, Ludo=E2=80=99. From debbugs-submit-bounces@debbugs.gnu.org Wed May 11 01:30:37 2022 Received: (at 55298-done) by debbugs.gnu.org; 11 May 2022 05:30:37 +0000 Received: from localhost ([127.0.0.1]:35630 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1noevl-0002zN-89 for submit@debbugs.gnu.org; Wed, 11 May 2022 01:30:37 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:44108) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1noevi-0002zB-90 for 55298-done@debbugs.gnu.org; Wed, 11 May 2022 01:30:35 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Type:MIME-Version:Message-ID:Date: References:In-Reply-To:Subject:Cc:To:From:Sender:Reply-To: Content-Transfer-Encoding:Content-ID:Content-Description:Resent-Date: Resent-From:Resent-Sender:Resent-To:Resent-Cc:Resent-Message-ID:List-Id: List-Help:List-Unsubscribe:List-Subscribe:List-Post:List-Owner:List-Archive; bh=ek26YlpCF46ntiWDl04+yVJM0OfZ/NsY6bTOTuC7nHg=; b=XY5RDSMBUKQ82vHKZyFJPoIfvN WE+2/baLaopk4Aqd5nQnCqODoltZnIXLzqxGlhIuVJAqlZCNmcMwu3F4QgaUNFufmk2MnNZQVa6Nn pF/w/rD02hOwxc9d/vEsSstriM99vvzm9mvw2IDzBZtxMpYcIu3IawVbJ3eUG/8sBMKXj/gSd6BSI iKSIEd5X4Bxbp6l0IjNkC9pzw4hEEPY/2RF+xVyR422A4dQRjUBZR9jiAW2rOy5bGuw8/EhUprZbg r5W2AocHYQim48BCcRhpL3pCgOptuyDnLfIR3m1uLsjNTyujHYxMHU4sqV4br6p1u+rhaQlMBswzU TPBut8zQ==; Received: from [192.168.2.1] (port=8140 helo=steel) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.95) (envelope-from ) id 1noevf-000EAZ-B4; Wed, 11 May 2022 11:00:31 +0530 From: Arun Isaac To: Ludovic =?utf-8?Q?Court=C3=A8s?= Subject: Re: bug#55298: [PATCH 0/1] Do not propagate cwltool inputs. In-Reply-To: <87a6bpovg2.fsf@gnu.org> References: <20220507093443.4214-1-arunisaac@systemreboot.net> <87a6bpovg2.fsf@gnu.org> Date: Wed, 11 May 2022 11:00:29 +0530 Message-ID: <87zgjo3abu.fsf@systemreboot.net> MIME-Version: 1.0 Content-Type: text/plain X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55298-done Cc: 55298-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) > You forgot to send the actual patch, Oops, sorry! > but I think removing propagated inputs in this case is a good idea. > Got for it! Done, thank you! From unknown Tue Jun 17 21:53:27 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Wed, 08 Jun 2022 11:24:07 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator