From unknown Wed Jun 18 23:14:56 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#55241 <55241@debbugs.gnu.org> To: bug#55241 <55241@debbugs.gnu.org> Subject: Status: [PATCH 3/4] gnu: Add r-smurf. Reply-To: bug#55241 <55241@debbugs.gnu.org> Date: Thu, 19 Jun 2025 06:14:56 +0000 retitle 55241 [PATCH 3/4] gnu: Add r-smurf. reassign 55241 guix-patches submitter 55241 M=C4=83d=C4=83lin Ionel Patra=C8=99cu severity 55241 normal tag 55241 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Tue May 03 02:53:34 2022 Received: (at submit) by debbugs.gnu.org; 3 May 2022 06:53:34 +0000 Received: from localhost ([127.0.0.1]:38540 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPe-00060P-Hi for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:34 -0400 Received: from lists.gnu.org ([209.51.188.17]:45510) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPc-000609-AZ for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:32 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:47872) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPa-0008NQ-Np for guix-patches@gnu.org; Tue, 03 May 2022 02:53:32 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:59811) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPY-0006ez-HN for guix-patches@gnu.org; Tue, 03 May 2022 02:53:30 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 4DE96300169 for ; Tue, 3 May 2022 08:53:26 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1651560805; x=1653375206; bh=VZTTdtHBfv0Ql7B1Qo7yQwnQz44Z+Xf3Iwi TtD/nHpw=; b=m0JVnQsZdYURwnKbRYMeJzWQEg7xzh2H504tJS+sk9SPJbhxTW6 CXmaoqSEQZKm8otWUjPlU+xweR9e71vOx1tUdOwbNYaHVvYXmr3IxzbNT/ox4EH6 PCnX4lyldOKfhTRnjI1rJyGbBc0LQZDKbvSGm+aPSW6A0wdM53bWDQe0= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 59M3TlH3pnfu for ; Tue, 3 May 2022 08:53:25 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 3 May 2022 08:53:25 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.6; Tue, 3 May 2022 08:53:24 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH 3/4] gnu: Add r-smurf. Date: Tue, 3 May 2022 08:53:10 +0200 Message-ID: <20220503065311.9192-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> References: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-AS-Result: No-10--1.022900-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6v8fLAX0P50AxLxDYO3UlDEYx760ONDcWm3P fEX0yKHHxSJI9FrYN42HdNGuvvf8oo8WMkQWv6iXBcIE78YqRWvcUt5lc1lLgKIzdZS3ou0VSLl cWeO1N48PZmEi469a07dtNXnLsoV8LraCVwvI0FVCozHgFSMQb4pYQ5SJBQvPGCY87cq/qbhq3l oeMiDRPbecpFU+TWJ1ZKCalsVmcQjWQPYq1JOarY9u3lK2/Yrn87HRNT0KLkg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.022900-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-SNTS-SMTP: 753294651DC09A4F4351B7A2EA22EFC3C3F1B72D9C4F4F9884469C878CC7E9202002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-smurf): New variable. --- gnu/packages/cran.scm | 42 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 63e2b71cd3..099bfb8002 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5907,6 +5907,48 @@ (define-public r-sm and density estimation") (license license:gpl2+))) +(define-public r-smurf + (package + (name "r-smurf") + (version "1.1.2") + (source (origin + (method url-fetch) + (uri (cran-uri "smurf" version)) + (sha256 + (base32 + "00q54pg42anilhcshhjvv277mkszbpzpkf1g7srs7cjd5skjvsaf")))) + (properties `((upstream-name . "smurf"))) + (build-system r-build-system) + (propagated-inputs + (list r-catdata + r-glmnet + r-mass + r-matrix + r-mgcv + r-rcolorbrewer + r-rcpp + r-rcpparmadillo + r-speedglm)) + (native-inputs (list r-knitr)) + (home-page "https://gitlab.com/TReynkens/smurf") + (synopsis "Sparse multi-type regularized feature modeling") + (description + "The @code{smurf} package contains the implementation of the @dfn{Sparse +Multi-type Regularized Feature} (SMuRF) modeling algorithm to fit +@dfn{generalized linear models} (GLMs) with multiple types of predictors via +regularized maximum likelihood. Next to the fitting procedure, following +functionality is available: + +@itemize @bullet +@item +Selection of the regularization tuning parameter lambda using three different +approaches: in-sample, out-of-sample or using cross-validation. +@item +S3 methods to handle the fitted object including visualization of the coefficients +and a model summary. +@end itemize") + (license license:gpl2+))) + (define-public r-venndiagram (package (name "r-venndiagram") -- 2.36.0 From debbugs-submit-bounces@debbugs.gnu.org Tue May 03 03:34:12 2022 Received: (at control) by debbugs.gnu.org; 3 May 2022 07:34:13 +0000 Received: from localhost ([127.0.0.1]:38589 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nln2y-00070k-OR for submit@debbugs.gnu.org; Tue, 03 May 2022 03:34:12 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:56055) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nln2w-00070V-Pj for control@debbugs.gnu.org; Tue, 03 May 2022 03:34:11 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id 3812FA0144 for ; Tue, 3 May 2022 09:34:04 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= mime-version:content-type:content-type:content-language :accept-language:message-id:date:date:subject:subject:from:from :received:received:received:received; s=mdc; t=1651563243; x= 1653377644; bh=3mgtG6M//V2KJdngmuzrXoMzUt23EqPk7TOabgIF3jc=; b=Z wYO2RA4vfGVfnOK2bsB1SstDkTJXkTVMnSShIif0OdUQDPGTLuyBA6LEcRodo/cZ 1KSGdEiu5WZNiZgfSphd+kS3e/V6/c6vr+j9aZ6MQqp/Lz0eOaTL7U8N21cenxJJ lqC9junE4n/wbXFBNzHhT2wuImjGSOSRzKUBRgz8qA= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 2px8ZU4pnDsg for ; Tue, 3 May 2022 09:34:03 +0200 (CEST) Received: from SW-IT-P-EX3.mdc-berlin.net (mgw3.mdc-berlin.de [141.80.113.61]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 3 May 2022 09:34:03 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) by SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.6; Tue, 3 May 2022 09:34:02 +0200 Received: from SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a]) by SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a%2]) with mapi id 15.01.2507.006; Tue, 3 May 2022 09:34:02 +0200 From: "MadalinIonel.Patrascu@mdc-berlin.de" To: "control@debbugs.gnu.org" Subject: Thread-Index: AQHYXsAieD77yHhtRE2R5LmwA1ZMfQ== Date: Tue, 3 May 2022 07:34:02 +0000 Message-ID: Accept-Language: en-US, de-DE Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.52] x-tm-as-product-ver: SMEX-14.0.0.3092-9.0.1002-26870.006 x-tm-as-result: No-10--7.341800-5.000000 x-tmase-matchedrid: /wpIrmKs80o25XOhnouJ5RuurbgYp+HQCCo+lsDuynVL/3rQmWrTBjgo 8pDHL4T+2jLjTN2/0fpT0gFhwwXJ3aaDx0F8sKdXYrc32n84WHq87rU89eLPKdH5gcDnBDmDMK4 UhQv3SRj4BkpzzzwsrZVrrQyBZ96QgbgOcLxbGcL/McoAQhls9IfnRpAkTxUolwV2iaAfSWf4cK Zpr+0wdlsKO+9Zlb5JmlmcjfJPlsk46Sly2Ayi9cB5WbWedZl0sTOtFJOIkxoYbQJP95k+uLP5K p5ouscpZUiulHUWTZvQLzmCcDSYNQ== x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--7.341800-5.000000 x-tmase-version: SMEX-14.0.0.3092-9.0.1002-26870.006 x-tm-snts-smtp: 4354ACE32C54AA6A52947F9EE2D70DD0113A9A798D10F4E448567926893E435A2002:F Content-Type: multipart/alternative; boundary="_000_f3718a5c6cc249e6a684efc4e61e9833mdcberlinde_" MIME-Version: 1.0 X-Spam-Score: -0.3 (/) X-Debbugs-Envelope-To: control X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.3 (-) --_000_f3718a5c6cc249e6a684efc4e61e9833mdcberlinde_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable merge 55237 55239 55238 55241 55240 thanks --_000_f3718a5c6cc249e6a684efc4e61e9833mdcberlinde_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable

merge 55237 55239 55238 55241 55240

thanks

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