GNU bug report logs - #55239
[PATCH 1/4] gnu: Add r-forestplot.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#55241: closed ([PATCH 1/4] gnu: Add r-forestplot.)
Date: Mon, 31 Oct 2022 19:11:03 +0000

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Your bug report

#55239: [PATCH 3/4] gnu: Add r-smurf.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 55241 <at> debbugs.gnu.org.

-- 
55239: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=55239
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 55239-done <at> debbugs.gnu.org
Subject: [PATCH 1/4] gnu: Add r-forestplot.
Date: Mon, 31 Oct 2022 20:10:36 +0100

Applied, thanks!

-- 
Ricardo

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH 3/4] gnu: Add r-smurf.
Date: Tue, 3 May 2022 08:53:10 +0200

* gnu/packages/cran.scm (r-smurf): New variable.
---
 gnu/packages/cran.scm | 42 ++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 42 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 63e2b71cd3..099bfb8002 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5907,6 +5907,48 @@ (define-public r-sm
 and density estimation")
     (license license:gpl2+)))
 
+(define-public r-smurf
+  (package
+    (name "r-smurf")
+    (version "1.1.2")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "smurf" version))
+              (sha256
+               (base32
+                "00q54pg42anilhcshhjvv277mkszbpzpkf1g7srs7cjd5skjvsaf"))))
+    (properties `((upstream-name . "smurf")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-catdata
+           r-glmnet
+           r-mass
+           r-matrix
+           r-mgcv
+           r-rcolorbrewer
+           r-rcpp
+           r-rcpparmadillo
+           r-speedglm))
+    (native-inputs (list r-knitr))
+    (home-page "https://gitlab.com/TReynkens/smurf")
+    (synopsis "Sparse multi-type regularized feature modeling")
+    (description
+     "The @code{smurf} package contains the implementation of the @dfn{Sparse
+Multi-type Regularized Feature} (SMuRF) modeling algorithm to fit
+@dfn{generalized linear models} (GLMs) with multiple types of predictors via
+regularized maximum likelihood.  Next to the fitting procedure, following
+functionality is available:
+
+@itemize @bullet
+@item
+Selection of the regularization tuning parameter lambda using three different
+approaches: in-sample, out-of-sample or using cross-validation.
+@item
+S3 methods to handle the fitted object including visualization of the coefficients
+and a model summary.
+@end itemize")
+    (license license:gpl2+)))
+
 (define-public r-venndiagram
   (package
     (name "r-venndiagram")
-- 
2.36.0

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