From unknown Sat Sep 20 13:00:43 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#55239] [PATCH 1/4] gnu: Add r-forestplot. Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 03 May 2022 06:54:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 55239 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 55239@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.165156081123069 (code B ref -1); Tue, 03 May 2022 06:54:02 +0000 Received: (at submit) by debbugs.gnu.org; 3 May 2022 06:53:31 +0000 Received: from localhost ([127.0.0.1]:38534 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPa-0005zw-TT for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:31 -0400 Received: from lists.gnu.org ([209.51.188.17]:45494) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPY-0005zg-W5 for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:29 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:47842) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPY-0008Mb-MV for guix-patches@gnu.org; Tue, 03 May 2022 02:53:28 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:54845) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPW-0006ev-Pl for guix-patches@gnu.org; Tue, 03 May 2022 02:53:28 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id E6BE7300150 for ; Tue, 3 May 2022 08:53:24 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1651560804; x=1653375205; bh=qy+s91X9rSp3O9FbFQoMxNNSBlOMV7cj8xmdlakeVwA=; b=j15B9MJjWPTh sHQIuLFv+4525p3BKysqhvJEpjiBh6vM4O/uEr/ZlymdoqIs4/WARGzQZ9MxoHtF 3JxeSQDRAPaK3JHP8Qh6dr2ODIy/jSWFY23dp92oLDaXvtabvVTm0SE3+xakqZ/I 1oXfqFR+XWlG2fvs5E/vBnXmMCL0MrM= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id fFyXvrNb5btI for ; Tue, 3 May 2022 08:53:24 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 3 May 2022 08:53:24 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.6; Tue, 3 May 2022 08:53:23 +0200 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Tue, 3 May 2022 08:53:08 +0200 Message-ID: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-AS-Result: No-10--4.218400-5.000000 X-TMASE-MatchedRID: n8dyCgqCzuv/R1NSMc2qCStPpXoicS5XwTlc9CcHMZerwqxtE531VICu qghmtWfXxUae82fvOzup9XBHPjLuGiq+GZ9ZHxIhuW77/y896siFzNNPDc6umMicqvB+icULi0x TsP0eePJ7MSP7SLpuGHpRFDEAszMOx7fBXoDaFyFFdmLrX42PXAT2OEnoCt4864sf0Egj7iqsqx rFSI3/KRfSNx4Mm0chfpXHFYWCQdejxYyRBa/qJcFwgTvxipFa9xS3mVzWUuBHZpq/WXaosp47i FwVw1xCR/xVHeito/YRzMLiflNVaC44DBqyWdXNV6fpQuk3VQiNac/lldi2V/YZmkLT0MpvX5Dy SDQYgp8xlBL5DyzlmdxSR7be7fnTFTs4ljtt094P2K/+wkyxVzs7KL+6XFB4pSBl0hpeDh8= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.218400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-SNTS-SMTP: B97AFE3C31843BA4AA5EC07B55653CFCDF8D1F93183509469F62A5668AFD22B12002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-forestplot): New variable. X-Debbugs-Cc: rekado@elephly.net --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 91c54bac9a..864540adf1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -24377,6 +24377,33 @@ (define-public r-forecast space models and automatic ARIMA modelling.") (license license:gpl3))) +(define-public r-forestplot + (package + (name "r-forestplot") + (version "2.0.1") + (source (origin + (method url-fetch) + (uri (cran-uri "forestplot" version)) + (sha256 + (base32 + "0bzwi6ws0qjq1pqiadssynbkxxd4zjp974jfdplmv16fcyszqhyi")))) + (properties `((upstream-name . "forestplot"))) + (build-system r-build-system) + (propagated-inputs + (list r-checkmate + r-magrittr)) + (native-inputs (list r-knitr)) + (home-page "https://gforge.se/packages/") + (synopsis "Advanced forest plot using @code{grid} graphics") + (description + "This package provides a forest plot that allows for multiple confidence +intervals per row, custom fonts for each text element, custom confidence +intervals, text mixed with expressions, and more. The aim is to extend the use +of forest plots beyond meta-analyses. This is a more general version of the +original @code{rmeta} package's @code{forestplot()} function and relies heavily +on the @code{grid} package.") + (license license:gpl2))) + (define-public r-formattable (package (name "r-formattable") base-commit: 098f2eea331121905e3c867f478b22cea3510841 -- 2.36.0 From debbugs-submit-bounces@debbugs.gnu.org Tue May 03 03:34:12 2022 Received: (at control) by debbugs.gnu.org; 3 May 2022 07:34:13 +0000 Received: from localhost ([127.0.0.1]:38589 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nln2y-00070k-OR for submit@debbugs.gnu.org; Tue, 03 May 2022 03:34:12 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:56055) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nln2w-00070V-Pj for control@debbugs.gnu.org; Tue, 03 May 2022 03:34:11 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id 3812FA0144 for ; Tue, 3 May 2022 09:34:04 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= mime-version:content-type:content-type:content-language :accept-language:message-id:date:date:subject:subject:from:from :received:received:received:received; s=mdc; t=1651563243; x= 1653377644; bh=3mgtG6M//V2KJdngmuzrXoMzUt23EqPk7TOabgIF3jc=; b=Z wYO2RA4vfGVfnOK2bsB1SstDkTJXkTVMnSShIif0OdUQDPGTLuyBA6LEcRodo/cZ 1KSGdEiu5WZNiZgfSphd+kS3e/V6/c6vr+j9aZ6MQqp/Lz0eOaTL7U8N21cenxJJ lqC9junE4n/wbXFBNzHhT2wuImjGSOSRzKUBRgz8qA= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 2px8ZU4pnDsg for ; Tue, 3 May 2022 09:34:03 +0200 (CEST) Received: from SW-IT-P-EX3.mdc-berlin.net (mgw3.mdc-berlin.de [141.80.113.61]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 3 May 2022 09:34:03 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) by SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.6; Tue, 3 May 2022 09:34:02 +0200 Received: from SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a]) by SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a%2]) with mapi id 15.01.2507.006; Tue, 3 May 2022 09:34:02 +0200 From: "MadalinIonel.Patrascu@mdc-berlin.de" To: "control@debbugs.gnu.org" Subject: Thread-Index: AQHYXsAieD77yHhtRE2R5LmwA1ZMfQ== Date: Tue, 3 May 2022 07:34:02 +0000 Message-ID: Accept-Language: en-US, de-DE Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.52] x-tm-as-product-ver: SMEX-14.0.0.3092-9.0.1002-26870.006 x-tm-as-result: No-10--7.341800-5.000000 x-tmase-matchedrid: /wpIrmKs80o25XOhnouJ5RuurbgYp+HQCCo+lsDuynVL/3rQmWrTBjgo 8pDHL4T+2jLjTN2/0fpT0gFhwwXJ3aaDx0F8sKdXYrc32n84WHq87rU89eLPKdH5gcDnBDmDMK4 UhQv3SRj4BkpzzzwsrZVrrQyBZ96QgbgOcLxbGcL/McoAQhls9IfnRpAkTxUolwV2iaAfSWf4cK Zpr+0wdlsKO+9Zlb5JmlmcjfJPlsk46Sly2Ayi9cB5WbWedZl0sTOtFJOIkxoYbQJP95k+uLP5K p5ouscpZUiulHUWTZvQLzmCcDSYNQ== x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--7.341800-5.000000 x-tmase-version: SMEX-14.0.0.3092-9.0.1002-26870.006 x-tm-snts-smtp: 4354ACE32C54AA6A52947F9EE2D70DD0113A9A798D10F4E448567926893E435A2002:F Content-Type: multipart/alternative; boundary="_000_f3718a5c6cc249e6a684efc4e61e9833mdcberlinde_" MIME-Version: 1.0 X-Spam-Score: -0.3 (/) X-Debbugs-Envelope-To: control X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.3 (-) --_000_f3718a5c6cc249e6a684efc4e61e9833mdcberlinde_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable merge 55237 55239 55238 55241 55240 thanks --_000_f3718a5c6cc249e6a684efc4e61e9833mdcberlinde_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable

merge 55237 55239 55238 55241 55240

thanks

--_000_f3718a5c6cc249e6a684efc4e61e9833mdcberlinde_-- From unknown Sat Sep 20 13:00:43 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Subject: bug#55239: closed ([PATCH 1/4] gnu: Add r-forestplot.) Message-ID: References: <87cza7erlw.fsf@elephly.net> <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> X-Gnu-PR-Message: they-closed 55239 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 55239@debbugs.gnu.org Date: Mon, 31 Oct 2022 19:11:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1667243462-27216-1" This is a multi-part message in MIME format... ------------=_1667243462-27216-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #55239: [PATCH 1/4] gnu: Add r-forestplot. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 55239@debbugs.gnu.org. --=20 55239: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D55239 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1667243462-27216-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 55239-done) by debbugs.gnu.org; 31 Oct 2022 19:10:59 +0000 Received: from localhost ([127.0.0.1]:41774 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opaBX-00074j-3D for submit@debbugs.gnu.org; Mon, 31 Oct 2022 15:10:59 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21129) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opaBT-00074Z-WE for 55239-done@debbugs.gnu.org; Mon, 31 Oct 2022 15:10:57 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1667243454; cv=none; d=zohomail.com; s=zohoarc; b=jrUOf9QTPN4HrPgrEG/wFB9KyDcv4OdtbIq+BCDyW34R7saMJ3evNOBJzTutTrh9Rv0YvO7PXFuAqC3Tz/1CrhAyGfF8N0XsYhPP18oA+uBRJaZ/9Su8ER4gSz96eZxDRICj7pcmhmAX90l38/SdL2f32Og4Z154YYoye+NTYac= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1667243454; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=IZdSYk2rnjKpFqBFu7FqCMSzs45xtf+pnAUrxGXeCwbwOqIbu1iKJcxcnW5Bbfi9KStEcaZHo7z/w+9lplM5dk/C+IBnw0IzojyO/vCtJZ4O0t3+UwRDTKX1NgL4WdOsBLEx+hDLsuf2a+5VV1oWFfIMO+a/MuEfQBlimvth/nw= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1667243454; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=PER7rT84LbWOh5G/cYgU0GOgPuyOe+4UKpW4wPflU/+LmwYB7fR2g7w6P678VMk0 7Avj65yVkHFzOGhuwvTdhT13H/udrxG73ftuF+k2ybZ78WRH+zbtzwwhI7mSRw1tBXe tMuXSZSEtAUbgZxv3FEZeqxnRNIR1VOuMIMcNFwk= Received: from localhost (155-111-142-46.pool.kielnet.net [46.142.111.155]) by mx.zohomail.com with SMTPS id 1667243453618481.61541536724724; Mon, 31 Oct 2022 12:10:53 -0700 (PDT) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 55239-done@debbugs.gnu.org Subject: [PATCH 1/4] gnu: Add r-forestplot. Date: Mon, 31 Oct 2022 20:10:36 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87cza7erlw.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 55239-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! -- Ricardo ------------=_1667243462-27216-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 3 May 2022 06:53:31 +0000 Received: from localhost ([127.0.0.1]:38534 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPa-0005zw-TT for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:31 -0400 Received: from lists.gnu.org ([209.51.188.17]:45494) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPY-0005zg-W5 for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:29 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:47842) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPY-0008Mb-MV for guix-patches@gnu.org; Tue, 03 May 2022 02:53:28 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:54845) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPW-0006ev-Pl for guix-patches@gnu.org; Tue, 03 May 2022 02:53:28 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id E6BE7300150 for ; Tue, 3 May 2022 08:53:24 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1651560804; x=1653375205; bh=qy+s91X9rSp3O9FbFQoMxNNSBlOMV7cj8xmdlakeVwA=; b=j15B9MJjWPTh sHQIuLFv+4525p3BKysqhvJEpjiBh6vM4O/uEr/ZlymdoqIs4/WARGzQZ9MxoHtF 3JxeSQDRAPaK3JHP8Qh6dr2ODIy/jSWFY23dp92oLDaXvtabvVTm0SE3+xakqZ/I 1oXfqFR+XWlG2fvs5E/vBnXmMCL0MrM= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id fFyXvrNb5btI for ; Tue, 3 May 2022 08:53:24 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 3 May 2022 08:53:24 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.6; Tue, 3 May 2022 08:53:23 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH 1/4] gnu: Add r-forestplot. Date: Tue, 3 May 2022 08:53:08 +0200 Message-ID: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-AS-Result: No-10--4.218400-5.000000 X-TMASE-MatchedRID: n8dyCgqCzuv/R1NSMc2qCStPpXoicS5XwTlc9CcHMZerwqxtE531VICu qghmtWfXxUae82fvOzup9XBHPjLuGiq+GZ9ZHxIhuW77/y896siFzNNPDc6umMicqvB+icULi0x TsP0eePJ7MSP7SLpuGHpRFDEAszMOx7fBXoDaFyFFdmLrX42PXAT2OEnoCt4864sf0Egj7iqsqx rFSI3/KRfSNx4Mm0chfpXHFYWCQdejxYyRBa/qJcFwgTvxipFa9xS3mVzWUuBHZpq/WXaosp47i FwVw1xCR/xVHeito/YRzMLiflNVaC44DBqyWdXNV6fpQuk3VQiNac/lldi2V/YZmkLT0MpvX5Dy SDQYgp8xlBL5DyzlmdxSR7be7fnTFTs4ljtt094P2K/+wkyxVzs7KL+6XFB4pSBl0hpeDh8= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.218400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-SNTS-SMTP: B97AFE3C31843BA4AA5EC07B55653CFCDF8D1F93183509469F62A5668AFD22B12002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-forestplot): New variable. X-Debbugs-Cc: rekado@elephly.net --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 91c54bac9a..864540adf1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -24377,6 +24377,33 @@ (define-public r-forecast space models and automatic ARIMA modelling.") (license license:gpl3))) +(define-public r-forestplot + (package + (name "r-forestplot") + (version "2.0.1") + (source (origin + (method url-fetch) + (uri (cran-uri "forestplot" version)) + (sha256 + (base32 + "0bzwi6ws0qjq1pqiadssynbkxxd4zjp974jfdplmv16fcyszqhyi")))) + (properties `((upstream-name . "forestplot"))) + (build-system r-build-system) + (propagated-inputs + (list r-checkmate + r-magrittr)) + (native-inputs (list r-knitr)) + (home-page "https://gforge.se/packages/") + (synopsis "Advanced forest plot using @code{grid} graphics") + (description + "This package provides a forest plot that allows for multiple confidence +intervals per row, custom fonts for each text element, custom confidence +intervals, text mixed with expressions, and more. The aim is to extend the use +of forest plots beyond meta-analyses. This is a more general version of the +original @code{rmeta} package's @code{forestplot()} function and relies heavily +on the @code{grid} package.") + (license license:gpl2))) + (define-public r-formattable (package (name "r-formattable") base-commit: 098f2eea331121905e3c867f478b22cea3510841 -- 2.36.0 ------------=_1667243462-27216-1-- From unknown Sat Sep 20 13:00:43 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "MadalinIonel.Patrascu@mdc-berlin.de" Subject: bug#55237: closed ([PATCH 1/4] gnu: Add r-forestplot.) Message-ID: References: <87cza7erlw.fsf@elephly.net> <5ff70a0fac56459392da3f39b19f290e@mdc-berlin.de> X-Gnu-PR-Message: they-closed 55237 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 55237@debbugs.gnu.org Date: Mon, 31 Oct 2022 19:11:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1667243462-27216-3" This is a multi-part message in MIME format... ------------=_1667243462-27216-3 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #55239: gnu: Add r-forestplot, r-catdata, r-smurf and r-airpart which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 55237@debbugs.gnu.org. --=20 55239: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D55239 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1667243462-27216-3 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 55239-done) by debbugs.gnu.org; 31 Oct 2022 19:10:59 +0000 Received: from localhost ([127.0.0.1]:41774 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opaBX-00074j-3D for submit@debbugs.gnu.org; Mon, 31 Oct 2022 15:10:59 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21129) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opaBT-00074Z-WE for 55239-done@debbugs.gnu.org; Mon, 31 Oct 2022 15:10:57 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1667243454; cv=none; d=zohomail.com; s=zohoarc; b=jrUOf9QTPN4HrPgrEG/wFB9KyDcv4OdtbIq+BCDyW34R7saMJ3evNOBJzTutTrh9Rv0YvO7PXFuAqC3Tz/1CrhAyGfF8N0XsYhPP18oA+uBRJaZ/9Su8ER4gSz96eZxDRICj7pcmhmAX90l38/SdL2f32Og4Z154YYoye+NTYac= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1667243454; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=IZdSYk2rnjKpFqBFu7FqCMSzs45xtf+pnAUrxGXeCwbwOqIbu1iKJcxcnW5Bbfi9KStEcaZHo7z/w+9lplM5dk/C+IBnw0IzojyO/vCtJZ4O0t3+UwRDTKX1NgL4WdOsBLEx+hDLsuf2a+5VV1oWFfIMO+a/MuEfQBlimvth/nw= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1667243454; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=PER7rT84LbWOh5G/cYgU0GOgPuyOe+4UKpW4wPflU/+LmwYB7fR2g7w6P678VMk0 7Avj65yVkHFzOGhuwvTdhT13H/udrxG73ftuF+k2ybZ78WRH+zbtzwwhI7mSRw1tBXe tMuXSZSEtAUbgZxv3FEZeqxnRNIR1VOuMIMcNFwk= Received: from localhost (155-111-142-46.pool.kielnet.net [46.142.111.155]) by mx.zohomail.com with SMTPS id 1667243453618481.61541536724724; Mon, 31 Oct 2022 12:10:53 -0700 (PDT) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 55239-done@debbugs.gnu.org Subject: [PATCH 1/4] gnu: Add r-forestplot. Date: Mon, 31 Oct 2022 20:10:36 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87cza7erlw.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 55239-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! -- Ricardo ------------=_1667243462-27216-3 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 3 May 2022 06:50:56 +0000 Received: from localhost ([127.0.0.1]:38520 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmN6-0005vT-Eh for submit@debbugs.gnu.org; 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Tue, 3 May 2022 08:41:40 +0200 From: "MadalinIonel.Patrascu@mdc-berlin.de" To: "guix-patches@gnu.org" Subject: gnu: Add r-forestplot, r-catdata, r-smurf and r-airpart Thread-Topic: Add r-forestplot, r-catdata, r-smurf and r-airpart Thread-Index: AQHYXri0g49L2Ci+d0Cpo3TxrzfwVQ== Date: Tue, 3 May 2022 06:41:40 +0000 Message-ID: <5ff70a0fac56459392da3f39b19f290e@mdc-berlin.de> Accept-Language: en-US, de-DE Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.52] x-tm-as-product-ver: SMEX-14.0.0.3092-9.0.1002-26870.006 x-tm-as-result: No-10--13.165800-5.000000 x-tmase-matchedrid: 2wfub8HDRfOfkHSWeTTytMG0UNgaZpYqGsvgUMYAn4UWzPTbxO7R+tIS YzBUt2RaXVsEWVqYqaivJcrLMYkA70UuXkWTSi/R30kDaWZBE1RU4sxFq6igEUqa6TyhyXvPtAg K4TtXrP34BkpzzzwsrZVrrQyBZ96QgbgOcLxbGcL/McoAQhls9IfnRpAkTxUolwV2iaAfSWf+xO hjarOnHniO/k0KSuMEPgobo75L7fXNM/lR2GV6D6siodb2/FrxPyF95ry6Rkbas30uvc3yXcv0V hYa3SwpEze1V/T0TyU= x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--13.165800-5.000000 x-tmase-version: SMEX-14.0.0.3092-9.0.1002-26870.006 x-tm-snts-smtp: 8EC3B59442E992065175866939323F18EFC15459F7C2120006C5B3F9F5F14A5D2002:F Content-Type: multipart/alternative; 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--_000_5ff70a0fac56459392da3f39b19f290emdcberlinde_-- ------------=_1667243462-27216-3-- From unknown Sat Sep 20 13:00:43 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Subject: bug#55238: closed ([PATCH 1/4] gnu: Add r-forestplot.) Message-ID: References: <87cza7erlw.fsf@elephly.net> <20220503065311.9192-2-madalinionel.patrascu@mdc-berlin.de> X-Gnu-PR-Message: they-closed 55238 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 55238@debbugs.gnu.org Date: Mon, 31 Oct 2022 19:11:03 +0000 Content-Type: multipart/mixed; boundary="----------=_1667243463-27216-5" This is a multi-part message in MIME format... ------------=_1667243463-27216-5 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #55239: [PATCH 2/4] gnu: Add r-catdata. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 55238@debbugs.gnu.org. --=20 55239: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D55239 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1667243463-27216-5 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 55239-done) by debbugs.gnu.org; 31 Oct 2022 19:10:59 +0000 Received: from localhost ([127.0.0.1]:41774 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opaBX-00074j-3D for submit@debbugs.gnu.org; Mon, 31 Oct 2022 15:10:59 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21129) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opaBT-00074Z-WE for 55239-done@debbugs.gnu.org; Mon, 31 Oct 2022 15:10:57 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1667243454; cv=none; d=zohomail.com; s=zohoarc; b=jrUOf9QTPN4HrPgrEG/wFB9KyDcv4OdtbIq+BCDyW34R7saMJ3evNOBJzTutTrh9Rv0YvO7PXFuAqC3Tz/1CrhAyGfF8N0XsYhPP18oA+uBRJaZ/9Su8ER4gSz96eZxDRICj7pcmhmAX90l38/SdL2f32Og4Z154YYoye+NTYac= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1667243454; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=IZdSYk2rnjKpFqBFu7FqCMSzs45xtf+pnAUrxGXeCwbwOqIbu1iKJcxcnW5Bbfi9KStEcaZHo7z/w+9lplM5dk/C+IBnw0IzojyO/vCtJZ4O0t3+UwRDTKX1NgL4WdOsBLEx+hDLsuf2a+5VV1oWFfIMO+a/MuEfQBlimvth/nw= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1667243454; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=PER7rT84LbWOh5G/cYgU0GOgPuyOe+4UKpW4wPflU/+LmwYB7fR2g7w6P678VMk0 7Avj65yVkHFzOGhuwvTdhT13H/udrxG73ftuF+k2ybZ78WRH+zbtzwwhI7mSRw1tBXe tMuXSZSEtAUbgZxv3FEZeqxnRNIR1VOuMIMcNFwk= Received: from localhost (155-111-142-46.pool.kielnet.net [46.142.111.155]) by mx.zohomail.com with SMTPS id 1667243453618481.61541536724724; Mon, 31 Oct 2022 12:10:53 -0700 (PDT) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 55239-done@debbugs.gnu.org Subject: [PATCH 1/4] gnu: Add r-forestplot. Date: Mon, 31 Oct 2022 20:10:36 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87cza7erlw.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 55239-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! -- Ricardo ------------=_1667243463-27216-5 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 3 May 2022 06:53:30 +0000 Received: from localhost ([127.0.0.1]:38532 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPa-0005zu-KA for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:30 -0400 Received: from lists.gnu.org ([209.51.188.17]:45498) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPZ-0005zh-02 for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:29 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:47844) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPY-0008Md-NO for guix-patches@gnu.org; Tue, 03 May 2022 02:53:28 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:58417) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPW-0006ew-Ql for guix-patches@gnu.org; Tue, 03 May 2022 02:53:28 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 9CF3A300159 for ; Tue, 3 May 2022 08:53:25 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1651560804; x=1653375205; bh=pHGNm8Ty7tn0j7X22eKVpB2au93lyeQ2d7n d1Lfuu48=; b=IvdXGyrzGjGCGwjoZpBOpwA9d6SC+KVngHCW7EC7juqL9+hK3+C QY2uzmTrZnBgbUDyMzhHe98z1TxwN1HIcECoJxEjO0rmeU7aN2BomkpmaEGXf4ZF MRPC3wHQXmM/F3Bdt7fwwNHLewdyHJG8/j4vgRI3b1/idR+R+efadOHY= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 1OcRIbjboRql for ; Tue, 3 May 2022 08:53:24 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 3 May 2022 08:53:24 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.6; Tue, 3 May 2022 08:53:23 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH 2/4] gnu: Add r-catdata. Date: Tue, 3 May 2022 08:53:09 +0200 Message-ID: <20220503065311.9192-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> References: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-AS-Result: No-10--1.004400-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXT/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEC7h z4UqtlQhRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v/kwFzTzcgzhLNEWcDuceZVqbs +nJ/tFJGtJT1Y2DqG8BJTjjs9yT6Yo8WMkQWv6iV3LAytsQR4e42j49Ftap9Eymsk/wUE4hoAZD QAlqsxiNrWYDVt85KFxSiR6Cn7T+RNpWERx8MmvUaX//FpkvohdKfWJ2YjQE1pmh3U29TSznEQf FAiJE/vDOnonhuLYTstuB+MUSHetrTnVnv1JP77sGTvZJmllrz/PhPL0kApH8kjm+elEcbI X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.004400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-SNTS-SMTP: 581135EB240DD1F4052EE8CE793F55EF86BB3B34813E74B805AAB0D0C1E6D6922002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-catdata): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 864540adf1..63e2b71cd3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8191,6 +8191,28 @@ (define-public r-catdap evaluated by the @dfn{Akaike Information Criterion} (AIC).") (license license:gpl2+))) +(define-public r-catdata + (package + (name "r-catdata") + (version "1.2.2") + (source (origin + (method url-fetch) + (uri (cran-uri "catdata" version)) + (sha256 + (base32 + "14kx7yi0cv6dyh9wjasb8gn6cp1bhglgwql7dc2a7lqvdcp0d5vj")))) + (properties `((upstream-name . "catdata"))) + (build-system r-build-system) + (propagated-inputs (list r-mass)) + (home-page "https://cran.r-project.org/package=catdata") + (synopsis + "Datasets and examples used in the book @emph{Regression for Categorical Data}") + (description + "This R package contains examples from the book @emph{Regression for +Categorical Data}, Tutz 2012, Cambridge University Press. The names of the +examples refer to the chapter and the data set that is used.") + (license license:gpl2))) + (define-public r-arules (package (name "r-arules") -- 2.36.0 ------------=_1667243463-27216-5-- From unknown Sat Sep 20 13:00:43 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Subject: bug#55240: closed ([PATCH 1/4] gnu: Add r-forestplot.) Message-ID: References: <87cza7erlw.fsf@elephly.net> <20220503065311.9192-4-madalinionel.patrascu@mdc-berlin.de> X-Gnu-PR-Message: they-closed 55240 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 55240@debbugs.gnu.org Date: Mon, 31 Oct 2022 19:11:03 +0000 Content-Type: multipart/mixed; boundary="----------=_1667243463-27216-7" This is a multi-part message in MIME format... ------------=_1667243463-27216-7 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #55239: [PATCH 4/4] gnu: Add r-airpart. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 55240@debbugs.gnu.org. --=20 55239: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D55239 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1667243463-27216-7 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 55239-done) by debbugs.gnu.org; 31 Oct 2022 19:10:59 +0000 Received: from localhost ([127.0.0.1]:41774 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opaBX-00074j-3D for submit@debbugs.gnu.org; Mon, 31 Oct 2022 15:10:59 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21129) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opaBT-00074Z-WE for 55239-done@debbugs.gnu.org; Mon, 31 Oct 2022 15:10:57 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1667243454; cv=none; d=zohomail.com; s=zohoarc; b=jrUOf9QTPN4HrPgrEG/wFB9KyDcv4OdtbIq+BCDyW34R7saMJ3evNOBJzTutTrh9Rv0YvO7PXFuAqC3Tz/1CrhAyGfF8N0XsYhPP18oA+uBRJaZ/9Su8ER4gSz96eZxDRICj7pcmhmAX90l38/SdL2f32Og4Z154YYoye+NTYac= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1667243454; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=IZdSYk2rnjKpFqBFu7FqCMSzs45xtf+pnAUrxGXeCwbwOqIbu1iKJcxcnW5Bbfi9KStEcaZHo7z/w+9lplM5dk/C+IBnw0IzojyO/vCtJZ4O0t3+UwRDTKX1NgL4WdOsBLEx+hDLsuf2a+5VV1oWFfIMO+a/MuEfQBlimvth/nw= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1667243454; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=PER7rT84LbWOh5G/cYgU0GOgPuyOe+4UKpW4wPflU/+LmwYB7fR2g7w6P678VMk0 7Avj65yVkHFzOGhuwvTdhT13H/udrxG73ftuF+k2ybZ78WRH+zbtzwwhI7mSRw1tBXe tMuXSZSEtAUbgZxv3FEZeqxnRNIR1VOuMIMcNFwk= Received: from localhost (155-111-142-46.pool.kielnet.net [46.142.111.155]) by mx.zohomail.com with SMTPS id 1667243453618481.61541536724724; Mon, 31 Oct 2022 12:10:53 -0700 (PDT) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 55239-done@debbugs.gnu.org Subject: [PATCH 1/4] gnu: Add r-forestplot. Date: Mon, 31 Oct 2022 20:10:36 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87cza7erlw.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 55239-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! -- Ricardo ------------=_1667243463-27216-7 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 3 May 2022 06:53:34 +0000 Received: from localhost ([127.0.0.1]:38538 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPe-00060N-8C for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:34 -0400 Received: from lists.gnu.org ([209.51.188.17]:45512) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPc-00060A-Ae for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:32 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:47874) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPa-0008NR-NX for guix-patches@gnu.org; Tue, 03 May 2022 02:53:32 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:34827) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPY-0006f5-H4 for guix-patches@gnu.org; Tue, 03 May 2022 02:53:30 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 0512230016F for ; Tue, 3 May 2022 08:53:27 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1651560806; x=1653375207; bh=aQXndCf+BGWLviJTtTxR3OWBgtg3KivRti5 +H6NT7rQ=; b=Vknc0lWYB1x3UPqMlwx4pqb9x4i8Ga/LHOHNEcWxBwxLDT/Z9an RM+bnsA7i9abzH2ZWqIOTU2k/hErpCcE46xZTLbLeSF7TKDdggh1NF2B/MqPKHgp RgIJ5AFdbYvKAZ52KqF44GOklvE+en54hHEipqp0tT2W1UWyr++fl730= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id ePbJIaFecFot for ; Tue, 3 May 2022 08:53:26 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 3 May 2022 08:53:26 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.6; Tue, 3 May 2022 08:53:24 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH 4/4] gnu: Add r-airpart. Date: Tue, 3 May 2022 08:53:11 +0200 Message-ID: <20220503065311.9192-4-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> References: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-AS-Result: No-10--2.162000-5.000000 X-TMASE-MatchedRID: JUGAxiLh1cP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCznrllatbeJEDhqOHSHQAkg4s8 u+Zeh+al9LQinZ4QefPcjNeVeWlqY+gtHj7OwNO22utO5qEfOUYhwCFkZl4Fwmxqpm/vO1GJD23 xx9AzFUDH1kpEXG3EJgx0fG+CluLsE9df5fg+EonPxdghPUWXVdtIwGTuDzk5Cu3LG9HAobXQJ8 8ZHP8DjvmJf6uotZp79ZjtYmCyQ6k+HGwSCjLh6vuvB6gAgryg= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.162000-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-SNTS-SMTP: 47F55C10060E0ECE3E477175D215F623228C66EAEF56F3D948AE03C4D012A7642002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-airpart): New variable. --- gnu/packages/bioconductor.scm | 46 +++++++++++++++++++++++++++++++++++ 1 file changed, 46 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a78903becc..2967c5016b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1877,6 +1877,52 @@ (define-public r-agilp ;; GPLv3. (license license:gpl3))) +(define-public r-airpart + (package + (name "r-airpart") + (version "1.4.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "airpart" version)) + (sha256 + (base32 + "0ljankgvgf8rby4z340wxx8v7acs9yz955p3a40jl6y8rz1svc06")))) + (properties `((upstream-name . "airpart"))) + (build-system r-build-system) + (propagated-inputs + (list r-apeglm + r-clue + r-complexheatmap + r-dplyr + r-dynamictreecut + r-emdbook + r-forestplot + r-ggplot2 + r-lpsolve + r-matrixstats + r-mclust + r-pbapply + r-plyr + r-rcolorbrewer + r-rlang + r-s4vectors + r-scater + r-singlecellexperiment + r-smurf + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/airpart") + (synopsis "Differential cell-type-specific allelic imbalance") + (description + "The @code{airpart} package identifies sets of genes displaying differential +cell-type-specific allelic imbalance across cell types or states, utilizing +single-cell allelic counts. It makes use of a generalized fused lasso with +binomial observations of allelic counts to partition cell types by their allelic +imbalance. Alternatively, a nonparametric method for partitioning cell types +is offered. The package includes a number of visualizations and quality control +functions for examining single cell allelic imbalance datasets.") + (license license:gpl2))) + (define-public r-aneufinder (package (name "r-aneufinder") -- 2.36.0 ------------=_1667243463-27216-7-- From unknown Sat Sep 20 13:00:43 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Subject: bug#55241: closed ([PATCH 1/4] gnu: Add r-forestplot.) Message-ID: References: <87cza7erlw.fsf@elephly.net> <20220503065311.9192-3-madalinionel.patrascu@mdc-berlin.de> X-Gnu-PR-Message: they-closed 55241 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 55241@debbugs.gnu.org Date: Mon, 31 Oct 2022 19:11:03 +0000 Content-Type: multipart/mixed; boundary="----------=_1667243463-27216-9" This is a multi-part message in MIME format... ------------=_1667243463-27216-9 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #55239: [PATCH 3/4] gnu: Add r-smurf. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 55241@debbugs.gnu.org. --=20 55239: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D55239 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1667243463-27216-9 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 55239-done) by debbugs.gnu.org; 31 Oct 2022 19:10:59 +0000 Received: from localhost ([127.0.0.1]:41774 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opaBX-00074j-3D for submit@debbugs.gnu.org; Mon, 31 Oct 2022 15:10:59 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21129) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1opaBT-00074Z-WE for 55239-done@debbugs.gnu.org; Mon, 31 Oct 2022 15:10:57 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1667243454; cv=none; d=zohomail.com; s=zohoarc; b=jrUOf9QTPN4HrPgrEG/wFB9KyDcv4OdtbIq+BCDyW34R7saMJ3evNOBJzTutTrh9Rv0YvO7PXFuAqC3Tz/1CrhAyGfF8N0XsYhPP18oA+uBRJaZ/9Su8ER4gSz96eZxDRICj7pcmhmAX90l38/SdL2f32Og4Z154YYoye+NTYac= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1667243454; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=IZdSYk2rnjKpFqBFu7FqCMSzs45xtf+pnAUrxGXeCwbwOqIbu1iKJcxcnW5Bbfi9KStEcaZHo7z/w+9lplM5dk/C+IBnw0IzojyO/vCtJZ4O0t3+UwRDTKX1NgL4WdOsBLEx+hDLsuf2a+5VV1oWFfIMO+a/MuEfQBlimvth/nw= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1667243454; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=PER7rT84LbWOh5G/cYgU0GOgPuyOe+4UKpW4wPflU/+LmwYB7fR2g7w6P678VMk0 7Avj65yVkHFzOGhuwvTdhT13H/udrxG73ftuF+k2ybZ78WRH+zbtzwwhI7mSRw1tBXe tMuXSZSEtAUbgZxv3FEZeqxnRNIR1VOuMIMcNFwk= Received: from localhost (155-111-142-46.pool.kielnet.net [46.142.111.155]) by mx.zohomail.com with SMTPS id 1667243453618481.61541536724724; Mon, 31 Oct 2022 12:10:53 -0700 (PDT) User-agent: mu4e 1.8.9; emacs 28.1 From: Ricardo Wurmus To: 55239-done@debbugs.gnu.org Subject: [PATCH 1/4] gnu: Add r-forestplot. Date: Mon, 31 Oct 2022 20:10:36 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87cza7erlw.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 55239-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! -- Ricardo ------------=_1667243463-27216-9 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 3 May 2022 06:53:34 +0000 Received: from localhost ([127.0.0.1]:38540 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPe-00060P-Hi for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:34 -0400 Received: from lists.gnu.org ([209.51.188.17]:45510) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlmPc-000609-AZ for submit@debbugs.gnu.org; Tue, 03 May 2022 02:53:32 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:47872) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPa-0008NQ-Np for guix-patches@gnu.org; Tue, 03 May 2022 02:53:32 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:59811) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nlmPY-0006ez-HN for guix-patches@gnu.org; Tue, 03 May 2022 02:53:30 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 4DE96300169 for ; Tue, 3 May 2022 08:53:26 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received:received:received; s=mdc; t= 1651560805; x=1653375206; bh=VZTTdtHBfv0Ql7B1Qo7yQwnQz44Z+Xf3Iwi TtD/nHpw=; b=m0JVnQsZdYURwnKbRYMeJzWQEg7xzh2H504tJS+sk9SPJbhxTW6 CXmaoqSEQZKm8otWUjPlU+xweR9e71vOx1tUdOwbNYaHVvYXmr3IxzbNT/ox4EH6 PCnX4lyldOKfhTRnjI1rJyGbBc0LQZDKbvSGm+aPSW6A0wdM53bWDQe0= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 59M3TlH3pnfu for ; Tue, 3 May 2022 08:53:25 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 3 May 2022 08:53:25 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.6; Tue, 3 May 2022 08:53:24 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH 3/4] gnu: Add r-smurf. Date: Tue, 3 May 2022 08:53:10 +0200 Message-ID: <20220503065311.9192-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> References: <20220503065311.9192-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-AS-Result: No-10--1.022900-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6v8fLAX0P50AxLxDYO3UlDEYx760ONDcWm3P fEX0yKHHxSJI9FrYN42HdNGuvvf8oo8WMkQWv6iXBcIE78YqRWvcUt5lc1lLgKIzdZS3ou0VSLl cWeO1N48PZmEi469a07dtNXnLsoV8LraCVwvI0FVCozHgFSMQb4pYQ5SJBQvPGCY87cq/qbhq3l oeMiDRPbecpFU+TWJ1ZKCalsVmcQjWQPYq1JOarY9u3lK2/Yrn87HRNT0KLkg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.022900-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26870.006 X-TM-SNTS-SMTP: 753294651DC09A4F4351B7A2EA22EFC3C3F1B72D9C4F4F9884469C878CC7E9202002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/cran.scm (r-smurf): New variable. --- gnu/packages/cran.scm | 42 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 63e2b71cd3..099bfb8002 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5907,6 +5907,48 @@ (define-public r-sm and density estimation") (license license:gpl2+))) +(define-public r-smurf + (package + (name "r-smurf") + (version "1.1.2") + (source (origin + (method url-fetch) + (uri (cran-uri "smurf" version)) + (sha256 + (base32 + "00q54pg42anilhcshhjvv277mkszbpzpkf1g7srs7cjd5skjvsaf")))) + (properties `((upstream-name . "smurf"))) + (build-system r-build-system) + (propagated-inputs + (list r-catdata + r-glmnet + r-mass + r-matrix + r-mgcv + r-rcolorbrewer + r-rcpp + r-rcpparmadillo + r-speedglm)) + (native-inputs (list r-knitr)) + (home-page "https://gitlab.com/TReynkens/smurf") + (synopsis "Sparse multi-type regularized feature modeling") + (description + "The @code{smurf} package contains the implementation of the @dfn{Sparse +Multi-type Regularized Feature} (SMuRF) modeling algorithm to fit +@dfn{generalized linear models} (GLMs) with multiple types of predictors via +regularized maximum likelihood. Next to the fitting procedure, following +functionality is available: + +@itemize @bullet +@item +Selection of the regularization tuning parameter lambda using three different +approaches: in-sample, out-of-sample or using cross-validation. +@item +S3 methods to handle the fitted object including visualization of the coefficients +and a model summary. +@end itemize") + (license license:gpl2+))) + (define-public r-venndiagram (package (name "r-venndiagram") -- 2.36.0 ------------=_1667243463-27216-9--