From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 28 14:16:13 2022 Received: (at submit) by debbugs.gnu.org; 28 Apr 2022 18:16:13 +0000 Received: from localhost ([127.0.0.1]:49897 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8gW-00030v-PI for submit@debbugs.gnu.org; Thu, 28 Apr 2022 14:16:13 -0400 Received: from lists.gnu.org ([209.51.188.17]:39172) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8gV-00030n-4G for submit@debbugs.gnu.org; Thu, 28 Apr 2022 14:16:11 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:37858) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nk8gF-0002Zm-4g for guix-patches@gnu.org; Thu, 28 Apr 2022 14:16:03 -0400 Received: from mail-4022.proton.ch ([185.70.40.22]:51380) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nk8gA-0004Ob-W7 for guix-patches@gnu.org; Thu, 28 Apr 2022 14:15:53 -0400 Date: Thu, 28 Apr 2022 18:15:39 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1651169742; bh=4342rz3deMnWxRk17hNDlD8Fhb5u1Mmu162ezfLWhAw=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:Feedback-ID:From:To: Cc:Date:Subject:Reply-To:Feedback-ID:Message-ID; b=oHkdgKAHUZBTbmHYA0tt/8Pbtf7OWm86FsmnxRfqIFwfLUDdcyts9+MSXIHLJ5mJA KHLmh/MAavejbzBQdTFdMGLdyUwsC0Wh7OPkKGhn23wBhNT+TDzVWTwDy1c8FxftXn i9kgfz5UDYkAOOLdanREj6m70NygQZwp707S3soPTzfvP107EjsG3l165A0u9kfFNx 6ohg0fJSxSBJquIMBiLhhNbZeDVUZhYlvEXs3Omy1/zV18odGOykjVMcmEsxn6yM3m qCY0x497InOwA3nLeiPSzSsXj60U/+h4hzqfgphPqkAq5l1rHq+YKPSqje0h83yjSv IvsAWJiSInsCw== To: guix-patches@gnu.org From: "Paul A. Patience" Subject: [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3. Message-ID: <20220428181532.281677-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=185.70.40.22; envelope-from=paul@apatience.com; helo=mail-4022.proton.ch X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit Cc: ludovic.courtes@inria.fr, paul@apatience.com X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) This patch series must be applied on top of the v2 patches in bug#50080 [1]= . It adds SUNDIALS to deal.II's dependencies and updates deal.II to the lates= t version. Unfortunately, and as I mentioned in bug#50080 [1], I cannot get Trilinos t= o compile, even though it doesn't seem to have changed since commit 06c11434c9288bc70ba958227d47d31d5e46eda7, which added the trilinos-for-dealii-openmpi package. Non-MPI deal.II compiles fine with this patch series. In other words, this patch series is probably fine to push, but we still ne= ed to address Trilinos's failing build. I would appreciate it if anyone (Ludovic?) could try building dealii-openmp= i (and therefore trilinos-for-dealii-openmpi) with this patch series applied,= to check if the problem is only on my end or not. [1]: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D50080 Paul A. Patience (5): gnu: sundials: Add 5.8.0. gnu: dealii: Remove trailing booleans. gnu: dealii-openmpi: Remove input labels. gnu: dealii: Add SUNDIALS dependency. gnu: dealii: Update to 9.3.3. gnu/local.mk | 2 - gnu/packages/maths.scm | 83 ++++++++++++------- ...lii-fix-compiliation-with-boost-1.78.patch | 40 --------- .../patches/dealii-fix-sundials.patch | 60 -------------- 4 files changed, 54 insertions(+), 131 deletions(-) delete mode 100644 gnu/packages/patches/dealii-fix-compiliation-with-boost= -1.78.patch delete mode 100644 gnu/packages/patches/dealii-fix-sundials.patch -- 2.36.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 28 14:19:33 2022 Received: (at 55170) by debbugs.gnu.org; 28 Apr 2022 18:19:33 +0000 Received: from localhost ([127.0.0.1]:49903 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8jl-00036T-9p for submit@debbugs.gnu.org; Thu, 28 Apr 2022 14:19:33 -0400 Received: from mail-40136.proton.ch ([185.70.40.136]:14920) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8jj-00036D-5O for 55170@debbugs.gnu.org; Thu, 28 Apr 2022 14:19:31 -0400 Date: Thu, 28 Apr 2022 18:19:22 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1651169964; bh=L8NkkCMPvPLQu2Bl/SyRzJ7vhTJIIzjXFGEU2MLrQpM=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:Feedback-ID:From:To: Cc:Date:Subject:Reply-To:Feedback-ID:Message-ID; b=EoAk4RzRAd4fhk19T2LQaNOfqKqqsDn/m4r1S/4BlHpRzUTUgSF+EV8HAuQDykJD4 1ukDX/FCnku665sbxJn2NOH9Ycnr18yGpAQBuD5nl5Z65i6u/8JBgWOS+my4aE+gxC WIbe0oiMEy8eXicFlFBG3Y/7sfAXJmwXw+nRNfPofkcrXoX6f8iOhc0jmOPyKRfp97 6k/cu2OMS6fRp6zCnPw1qbn2w/6GdCrs7Ejg+sez7hvMTLyDKRD+/Nua9e9zdwOIQO QNoXRJlnc4CHHzp10rZHZW7FrHvfNvL7S8LAu6KOyQGm2mDqnhvlg5CeLNmtnppOJ4 CYKI0AO5/At1w== To: 55170@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH 1/5] gnu: sundials: Add 5.8.0. Message-ID: <20220428181919.281837-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55170 Cc: ludovic.courtes@inria.fr, paul@apatience.com X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/maths.scm (sundials-5, sundials-openmpi-5): New variables. --- gnu/packages/maths.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index e97f732def..dbb9bf1cf3 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -6190,6 +6190,29 @@ (define-public sundials-openmpi ,%openmpi-setup))))) (synopsis "SUNDIALS with MPI support"))) +(define-public sundials-5 + (package + (inherit sundials) + (name "sundials") + (version "5.8.0") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/LLNL/sundials/releases/down= load/v" + version "/sundials-" version ".tar.gz")) + (sha256 + (base32 + "04x2x0jchf9kbcw2a1c6f4h4as8sr6k2snfz8z9k897pa4rl1vfl")))))) + +(define-public sundials-openmpi-5 + (package/inherit sundials-5 + (name "sundials-openmpi") + (propagated-inputs + (package-propagated-inputs sundials-openmpi)) + (arguments + (package-arguments sundials-openmpi)) + (synopsis (package-synopsis sundials-openmpi)))) + (define-public sundials-julia (package (inherit sundials) -- 2.36.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 28 14:19:41 2022 Received: (at 55170) by debbugs.gnu.org; 28 Apr 2022 18:19:41 +0000 Received: from localhost ([127.0.0.1]:49909 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8jt-00036w-HF for submit@debbugs.gnu.org; Thu, 28 Apr 2022 14:19:41 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:20056) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8js-00036c-8j for 55170@debbugs.gnu.org; Thu, 28 Apr 2022 14:19:40 -0400 Date: Thu, 28 Apr 2022 18:19:25 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1651169973; bh=uOUmP7P4KrWPsdLvrHVZaFFjtEsD1nCIJn8rooYtV+8=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=UWT2YvqV8kYY1fKWUdK1oTARUqVzaD/NuhLVVq6neyoV26v1BZg2RwzumXPVpFB7t TGw8jZ4XM/TCaOqSNMcMM7cC9qgtmR1CzKmIylbfFmMRCT+dCGUJIVCYvY+A8s85f0 1Cs3BwXnc4iysHpOyYuEd5aT4wjnVwIkShjusCPhn8eRz9rZluGgTTfiTnL1GLOb4R Uuf+ns8bOyDgDu/0QrWXH5lZB0/Vw1jFFdVtRvhFTWEr3vC8BFNJrdNExIkUkqxz47 9Qdw+WW8XWxJEwz1qHOyqg3wkIMmIhxmj3jvFE65lURuho42F3QYtXps6YWtyz53ow fRP/KstVE5SRQ== To: 55170@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH 2/5] gnu: dealii: Remove trailing booleans. Message-ID: <20220428181919.281837-2-paul@apatience.com> In-Reply-To: <20220428181919.281837-1-paul@apatience.com> References: <20220428181919.281837-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55170 Cc: ludovic.courtes@inria.fr, paul@apatience.com X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/maths.scm (dealii)[snippet]: Remove trailing boolean (and therefore the 'begin'). [native-inputs, inputs]: Reindent. [arguments]<#:phases>: Remove trailing boolean. --- gnu/packages/maths.scm | 23 ++++++++++------------- 1 file changed, 10 insertions(+), 13 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index dbb9bf1cf3..3c96378a4e 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -5183,22 +5183,20 @@ (define-public dealii "dealii-fix-sundials.patch")) (modules '((guix build utils))) (snippet - '(begin - ;; Remove bundled boost, muparser, TBB and UMFPACK. - (delete-file-recursively "bundled") - #t)))) + ;; Remove bundled boost, muparser, TBB and UMFPACK. + '(delete-file-recursively "bundled")))) (build-system cmake-build-system) (outputs '("out" "doc")) (native-inputs ;; Required to build the documentation. - (list graphviz doxygen perl)) + (list graphviz doxygen perl)) (inputs - (list arpack-ng - openblas - gfortran - lapack - muparser - zlib)) + (list arpack-ng + openblas + gfortran + lapack + muparser + zlib)) (propagated-inputs ;; Some scripts are installed into share/deal.II/scripts that require ;; perl and python, but they are not executable (and some are missing= the @@ -5235,8 +5233,7 @@ (define-public dealii (let ((doc (string-append (assoc-ref outputs "doc") "/share/doc/" ,name "-" ,version))) (for-each delete-file (map (lambda (f) (string-append doc "= /" f)) - '("detailed.log" "summary.log"))= )) - #t))))) + '("detailed.log" "summary.log"))= ))))))) (home-page "https://www.dealii.org/") (synopsis "Finite element library") (description -- 2.36.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 28 14:19:44 2022 Received: (at 55170) by debbugs.gnu.org; 28 Apr 2022 18:19:45 +0000 Received: from localhost ([127.0.0.1]:49911 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8jw-000377-P2 for submit@debbugs.gnu.org; Thu, 28 Apr 2022 14:19:44 -0400 Received: from mail-40136.proton.ch ([185.70.40.136]:62641) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8js-00036e-UI for 55170@debbugs.gnu.org; Thu, 28 Apr 2022 14:19:41 -0400 Date: Thu, 28 Apr 2022 18:19:29 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1651169974; bh=L/yl2X3MhvbNdbaFOypnzAbF6PEMwL2FMYOudExAltk=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=eacUK7b/g1s0ZIQX15O5sBSAie046KrigItTI9yMzcEqDrb5Ix009dYZLUhoQVhsz ULBEyUmj++VzKy03q2UbJsnIpCSxyHOIf9ToWibXGIboTSiNULauAASxAszYYYuCEX k0SJYccjfAU6rAa0B0PsAZYFAO6TMDSIq0rEiRZYsuJch/4O/1nJC+vpLoHOTcK6ZV XDyy+KKpBuFGa/3YFQ21NfRVvs+637t3ufpmM7J9vumUnCtBjHA5f2/RMfqFcLgm2P jQ5KqJWocPXZUjXoRGnLLvIqk6AKag8mlWXtMMmKXtUK24HF3KaiHP6ysEW0FI4eft 1fscw8WjsFXBw== To: 55170@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH 3/5] gnu: dealii-openmpi: Remove input labels. Message-ID: <20220428181919.281837-3-paul@apatience.com> In-Reply-To: <20220428181919.281837-1-paul@apatience.com> References: <20220428181919.281837-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55170 Cc: ludovic.courtes@inria.fr, paul@apatience.com X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/maths.scm (dealii-openmpi)[inputs]: Remove labels. [propagated-inputs]: Same. --- gnu/packages/maths.scm | 24 +++++++++++++----------- 1 file changed, 13 insertions(+), 11 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 3c96378a4e..e6ebada82b 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -5248,18 +5248,20 @@ (define-public dealii-openmpi (package/inherit dealii (name "dealii-openmpi") (inputs - `(("arpack" ,arpack-ng-openmpi) - ("metis" ,metis) - ("scalapack" ,scalapack) - ,@(alist-delete "arpack" (package-inputs dealii)))) + (modify-inputs (package-inputs dealii) + (delete "arpack") + (prepend arpack-ng-openmpi + metis + scalapack))) (propagated-inputs - `(("hdf5" ,hdf5-parallel-openmpi) - ("mpi" ,openmpi) - ("p4est" ,p4est-openmpi) - ("petsc" ,petsc-openmpi) - ("slepc" ,slepc-openmpi) - ("trilinos" ,trilinos-for-dealii-openmpi) - ,@(alist-delete "hdf5" (package-propagated-inputs dealii)))) + (modify-inputs (package-propagated-inputs dealii) + (delete "hdf5") + (prepend hdf5-parallel-openmpi + openmpi + p4est-openmpi + petsc-openmpi + slepc-openmpi + trilinos-for-dealii-openmpi))) (arguments (substitute-keyword-arguments (package-arguments dealii) ((#:configure-flags flags) -- 2.36.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 28 14:19:49 2022 Received: (at 55170) by debbugs.gnu.org; 28 Apr 2022 18:19:49 +0000 Received: from localhost ([127.0.0.1]:49917 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8k0-00037S-VZ for submit@debbugs.gnu.org; Thu, 28 Apr 2022 14:19:49 -0400 Received: from mail-4018.proton.ch ([185.70.40.18]:15129) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8jy-00036k-8j for 55170@debbugs.gnu.org; Thu, 28 Apr 2022 14:19:46 -0400 Date: Thu, 28 Apr 2022 18:19:32 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1651169980; bh=GfughrNWlPrfAe1MnjjEkxq8bxS1CYnNu9BsK/6X24M=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=gldHwZIFxwSAIxVHlhg6Fc8MhfOG7WaHt6R4OzOnacA2p2oTsCM+aDMUPp/uHXtBi wuNDg9GkYocmCD3aYQE6Qr84tp8yVDY26P6GPaC/UFdXkziA84bP/P+25yWuGQCjsJ be7CdwPB88uXlOdCY+5ATmjAsvA+QQg7B/3Axg6JC3P4oD8G5N/YCjGuJFHFD4Pjnq D4sMtm8KrBlAJfqIa8DtSRVin4tmetw2fAGOxH1Q/mmH8UvZWygsPUO0s8iQv5suRI /bYRDZ8Be36gMdCtKNjASCv6Py0sQ3LKFE30uoxduI2cWnQYjClXz9gjBaEkZCMx6H fOXFlc+IrBGIw== To: 55170@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH 4/5] gnu: dealii: Add SUNDIALS dependency. Message-ID: <20220428181919.281837-4-paul@apatience.com> In-Reply-To: <20220428181919.281837-1-paul@apatience.com> References: <20220428181919.281837-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55170 Cc: ludovic.courtes@inria.fr, paul@apatience.com X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/maths.scm (dealii)[propagated-inputs]: Add sundials-5. Reformat list to clarify comment. (dealii-openmpi)[propagated-inputs]: Add sundials-openmpi-5. --- gnu/packages/maths.scm | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index e6ebada82b..c74f055a07 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -5205,7 +5205,11 @@ (define-public dealii ;; Anyway, they are meant to be used at build time, so rather than ad= ding ;; the interpreters here, any package depending on them should just a= dd ;; the requisite interpreter to its native inputs. - (list boost hdf5 suitesparse ; For UMFPACK. + (list boost + hdf5 + suitesparse ; For UMFPACK. + ;; SUNDIALS 6.0.0 and later will be supported in deal.II 9.4.0. + sundials-5 tbb)) (arguments `(#:build-type "DebugRelease" ; Supports only Debug, Release and Debu= gRelease. @@ -5255,12 +5259,13 @@ (define-public dealii-openmpi scalapack))) (propagated-inputs (modify-inputs (package-propagated-inputs dealii) - (delete "hdf5") + (delete "hdf5" "sundials") (prepend hdf5-parallel-openmpi openmpi p4est-openmpi petsc-openmpi slepc-openmpi + sundials-openmpi-5 trilinos-for-dealii-openmpi))) (arguments (substitute-keyword-arguments (package-arguments dealii) -- 2.36.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Apr 28 14:19:52 2022 Received: (at 55170) by debbugs.gnu.org; 28 Apr 2022 18:19:52 +0000 Received: from localhost ([127.0.0.1]:49919 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8k4-00037e-77 for submit@debbugs.gnu.org; Thu, 28 Apr 2022 14:19:52 -0400 Received: from mail-4022.proton.ch ([185.70.40.22]:10982) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8jz-000373-EI for 55170@debbugs.gnu.org; Thu, 28 Apr 2022 14:19:48 -0400 Date: Thu, 28 Apr 2022 18:19:35 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1651169981; bh=058B6tEF1RvyJ2m9IcPEbyJxihWny7k4utf0c6KxuW8=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=ciNDbaqEgjJzbRu0otEcdmheHrlnelqVdt3qGfE9FxaNzyGyOtIegN710Jb8wXMgr f2Bhx9/W+eWGYZj1hS9w3QvvH1kIyeNfgaGf9k7oVAPEQ5jNV5VvkCQiO66Sc137/Z y/xIY6elQN8KrxEJPKybq6o5dDS11eEKLTA/f2MHKHMWF7diMp9kifGPCqNh9Ytrq8 GVy7HKt6PDe7G+vY/6wryTroJhi7GwDNCutwG9kdME802gfFmYLVEqBXH/PKx7Lz7l Ly0kEjtDsCQyWzbNtPHhvcjzr/Fk6zXM/j93rmjzO4FyjqK3yoPcdDq5lajdMMmGaA Bwk6HD9FlNt1Q== To: 55170@debbugs.gnu.org From: "Paul A. Patience" Subject: [PATCH 5/5] gnu: dealii: Update to 9.3.3. Message-ID: <20220428181919.281837-5-paul@apatience.com> In-Reply-To: <20220428181919.281837-1-paul@apatience.com> References: <20220428181919.281837-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55170 Cc: ludovic.courtes@inria.fr, paul@apatience.com X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/maths.scm (dealii): Update to 9.3.3. * gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch: Delete file. * gnu/packages/patches/dealii-fix-sundials.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. --- gnu/local.mk | 2 - gnu/packages/maths.scm | 6 +- ...lii-fix-compiliation-with-boost-1.78.patch | 40 ------------- .../patches/dealii-fix-sundials.patch | 60 ------------------- 4 files changed, 2 insertions(+), 106 deletions(-) delete mode 100644 gnu/packages/patches/dealii-fix-compiliation-with-boost= -1.78.patch delete mode 100644 gnu/packages/patches/dealii-fix-sundials.patch diff --git a/gnu/local.mk b/gnu/local.mk index 9bad87710c..d84d2bee3d 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -994,8 +994,6 @@ dist_patch_DATA =3D=09=09=09=09=09=09\ %D%/packages/patches/dbus-c++-gcc-compat.patch=09=09\ %D%/packages/patches/dbus-c++-threading-mutex.patch=09=09\ %D%/packages/patches/dbxfs-remove-sentry-sdk.patch=09=09\ - %D%/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch=09\ - %D%/packages/patches/dealii-fix-sundials.patch=09=09\ %D%/packages/patches/debops-constants-for-external-program-names.patch \ %D%/packages/patches/debops-debops-defaults-fall-back-to-less.patch \ %D%/packages/patches/dee-vapi.patch=09=09=09\ diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index c74f055a07..2d3e67a6b4 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -5171,16 +5171,14 @@ (define trilinos-for-dealii-openmpi (define-public dealii (package (name "dealii") - (version "9.3.2") + (version "9.3.3") (source (origin (method url-fetch) (uri (string-append "https://github.com/dealii/dealii/releases/" "download/v" version "/dealii-" version ".tar.g= z")) (sha256 - (base32 "1s0kawnljg24jj6nibwrif5gxdgg2daqfylhqqpl1lvmzmmxfhak")) - (patches (search-patches "dealii-fix-compiliation-with-boost-1.78.p= atch" - "dealii-fix-sundials.patch")) + (base32 "0a8s4yxcbvzmfgv5qcg27h2ss4fcnyhrhhs35glqj59l9cbmkysx")) (modules '((guix build utils))) (snippet ;; Remove bundled boost, muparser, TBB and UMFPACK. diff --git a/gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.p= atch b/gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch deleted file mode 100644 index 1937aa9afc..0000000000 --- a/gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch +++ /dev/null @@ -1,40 +0,0 @@ -From cbef761731627cece2a6f0276b87dacabbdc8a72 Mon Sep 17 00:00:00 2001 -From: David Wells -Date: Tue, 4 Jan 2022 12:46:30 -0500 -Subject: [PATCH] Fix compilation with boost 1.78. - -I bisected (fortunately Boost.Geometry a header-only library so adding the -include directory sufficed) and -https://github.com/boostorg/geometry/commit/6eb9e238bcb37e26dc31d16acf8267= 84a2ba30f4 -is where this problem starts for us. See also -https://github.com/boostorg/geometry/issues/792 - the easiest fix for all = such -issues is to just include the project header `boost/geometry/geometry.hpp`= . - -In this particular case, if you look at the commit which causes grid_tools= .cc -fails to compile, its because we were relying on some implicit includes. I= n -particular, we need the distance header to find the distance between point= s and -boxes, but that was previously included in another file. - -This patch has been adapted from -e0e76835519d122fd12b5858e16d08641a641c6a to apply to dealii 9.3.2. - -See https://github.com/dealii/dealii/pull/13165. ---- - include/deal.II/numerics/rtree.h | 1 + - 1 file changed, 1 insertion(+) - -diff --git a/include/deal.II/numerics/rtree.h b/include/deal.II/numerics/r= tree.h -index 1b9d04dacd..1e1bfd2932 100644 ---- a/include/deal.II/numerics/rtree.h -+++ b/include/deal.II/numerics/rtree.h -@@ -26,6 +26,7 @@ - #include - - DEAL_II_DISABLE_EXTRA_DIAGNOSTICS -+#include - #include - #include - DEAL_II_ENABLE_EXTRA_DIAGNOSTICS --- -2.30.2 - diff --git a/gnu/packages/patches/dealii-fix-sundials.patch b/gnu/packages/= patches/dealii-fix-sundials.patch deleted file mode 100644 index 7dd5df45da..0000000000 --- a/gnu/packages/patches/dealii-fix-sundials.patch +++ /dev/null @@ -1,60 +0,0 @@ -From af73f368f7f9d4a00df075d1a9f50fc495f8e87a Mon Sep 17 00:00:00 2001 -From: Timo Heister -Date: Sat, 25 Dec 2021 12:30:45 -0500 -Subject: [PATCH] fix sundials compilation - ---- - include/deal.II/sundials/n_vector.templates.h | 11 ++++++----- - 1 file changed, 6 insertions(+), 5 deletions(-) - -diff --git a/include/deal.II/sundials/n_vector.templates.h b/include/deal.= II/sundials/n_vector.templates.h -index 2b49e3efc9..746f63a03b 100644 ---- a/include/deal.II/sundials/n_vector.templates.h -+++ b/include/deal.II/sundials/n_vector.templates.h -@@ -253,13 +253,13 @@ namespace SUNDIALS - template < - typename VectorType, - typename std::enable_if_t::value, int>= =3D 0> -- MPI_Comm -+ const MPI_Comm & - get_communicator(N_Vector v); - - template < - typename VectorType, - typename std::enable_if_t::value, int> = =3D 0> -- MPI_Comm -+ const MPI_Comm & - get_communicator(N_Vector v); - - /** -@@ -481,7 +481,7 @@ SUNDIALS::internal::NVectorOperations::destroy(N_Vecto= r v) - - template ::value, int>> --MPI_Comm -+const MPI_Comm & - SUNDIALS::internal::NVectorOperations::get_communicator(N_Vector v) - { - return unwrap_nvector_const(v)->block(0).get_mpi_communicat= or(); -@@ -491,7 +491,7 @@ SUNDIALS::internal::NVectorOperations::get_communicato= r(N_Vector v) - - template ::value, int>> --MPI_Comm -+const MPI_Comm & - SUNDIALS::internal::NVectorOperations::get_communicator(N_Vector v) - { - return unwrap_nvector_const(v)->get_mpi_communicator(); -@@ -519,7 +519,8 @@ SUNDIALS::internal::NVectorOperations::get_communicato= r_as_void_ptr(N_Vector v) - (void)v; - return nullptr; - # else -- return get_communicator(v); -+ // We need to cast away const here, as SUNDIALS demands a pure `void *`= . -+ return &(const_cast(get_communicator(v))); - # endif - } - --- -2.30.2 - -- 2.36.0 From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 29 08:02:35 2022 Received: (at 55170) by debbugs.gnu.org; 29 Apr 2022 12:02:35 +0000 Received: from localhost ([127.0.0.1]:51066 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nkPKV-000383-9e for submit@debbugs.gnu.org; Fri, 29 Apr 2022 08:02:35 -0400 Received: from mail2-relais-roc.national.inria.fr ([192.134.164.83]:21283) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nkPKT-00032W-M0 for 55170@debbugs.gnu.org; Fri, 29 Apr 2022 08:02:34 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:references:date:in-reply-to: message-id:mime-version:content-transfer-encoding; bh=xI80feiPsfVJak28K1omyvZvVhc2qRogWWL2l1HDmnM=; b=YH2m8xvTs3YQrsnHKi0sXA9/T9gghvGjvRFhBbMdACJt8vzgDN+lds+z a+/ctIvrewUlAmykszZI7MJXqz+Xb9CyN/QbLdIEP+TL4LIA1HVm8PqEN l6JX/ZkKOsYqwrgrmPFMeaTCnzsQrxA4jpY/7ztBABcjGT/krU2ivMroy k=; Authentication-Results: mail2-relais-roc.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=ludovic.courtes@inria.fr; dmarc=fail (p=none dis=none) d=inria.fr X-IronPort-AV: E=Sophos;i="5.91,185,1647298800"; d="scan'208";a="33957796" Received: from unknown (HELO ribbon) ([193.50.110.83]) by mail2-relais-roc.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 29 Apr 2022 14:02:27 +0200 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: "Paul A. Patience" Subject: Re: [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3. References: <20220428181532.281677-1-paul@apatience.com> X-URL: http://www.fdn.fr/~lcourtes/ X-Revolutionary-Date: 10 =?utf-8?Q?Flor=C3=A9al?= an 230 de la =?utf-8?Q?R?= =?utf-8?Q?=C3=A9volution?= X-PGP-Key-ID: 0x090B11993D9AEBB5 X-PGP-Key: http://www.fdn.fr/~lcourtes/ludovic.asc X-PGP-Fingerprint: 3CE4 6455 8A84 FDC6 9DB4 0CFB 090B 1199 3D9A EBB5 X-OS: x86_64-pc-linux-gnu Date: Fri, 29 Apr 2022 14:02:27 +0200 In-Reply-To: <20220428181532.281677-1-paul@apatience.com> (Paul A. Patience's message of "Thu, 28 Apr 2022 18:15:39 +0000") Message-ID: <87tuac85d8.fsf@inria.fr> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 55170 Cc: 55170@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hello, "Paul A. Patience" skribis: > This patch series must be applied on top of the v2 patches in bug#50080 [= 1]. > It adds SUNDIALS to deal.II's dependencies and updates deal.II to the lat= est > version. Awesome. > Unfortunately, and as I mentioned in bug#50080 [1], I cannot get Trilinos= to > compile, even though it doesn't seem to have changed since commit > 06c11434c9288bc70ba958227d47d31d5e46eda7, which added the > trilinos-for-dealii-openmpi package. > Non-MPI deal.II compiles fine with this patch series. > > In other words, this patch series is probably fine to push, but we still = need > to address Trilinos's failing build. > > I would appreciate it if anyone (Ludovic?) could try building dealii-open= mpi > (and therefore trilinos-for-dealii-openmpi) with this patch series applie= d, to > check if the problem is only on my end or not. > > [1]: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D50080 For me =E2=80=98sundials-openmpi-5.8.0=E2=80=99 fails like this: --8<---------------cut here---------------start------------->8--- -- CXX standard set to 11 Appending C RELWITHDEBINFO flags Appending CXX RELWITHDEBINFO flags Appending Fortran RELWITHDEBINFO flags -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WO= RKS) (Required is at least version "2.0.0") -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MP= I_CXX_WORKS) (Required is at least version "2.0.0") -- Could NOT find MPI_Fortran (missing: MPI_Fortran_LIB_NAMES MPI_Fortran_F= 77_HEADER_DIR MPI_Fortran_MODULE_DIR MPI_Fortran_WORKS) (Required is at lea= st version "2.0.0") CMake Error at /gnu/store/zga679c4nldah9l8dhd5a4hdy820hcyf-cmake-minimal-3.= 21.4/share/cmake-3.21/Modules/FindPackageHandleStandardArgs.cmake:230 (mess= age): Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND MPI_Fortran_FOUND) (Required is at least version "2.0.0") Call Stack (most recent call first): /gnu/store/zga679c4nldah9l8dhd5a4hdy820hcyf-cmake-minimal-3.21.4/share/cm= ake-3.21/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_ME= SSAGE) /gnu/store/zga679c4nldah9l8dhd5a4hdy820hcyf-cmake-minimal-3.21.4/share/cm= ake-3.21/Modules/FindMPI.cmake:1748 (find_package_handle_standard_args) cmake/tpl/SundialsMPI.cmake:71 (find_package) cmake/SundialsSetupTPLs.cmake:22 (include) CMakeLists.txt:168 (include) -- Configuring incomplete, errors occurred! See also "/tmp/guix-build-sundials-openmpi-5.8.0.drv-0/build/CMakeFiles/CMa= keOutput.log". See also "/tmp/guix-build-sundials-openmpi-5.8.0.drv-0/build/CMakeFiles/CMa= keError.log". error: in phase 'configure': uncaught exception: %exception #<&invoke-error program: "cmake" arguments: ("../sundials-5.8.0"= "-DCMAKE_BUILD_TYPE=3DRelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=3D/gnu/store= /95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8.0" "-DCMAKE_INSTALL_= LIBDIR=3Dlib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=3DTRUE" "-DCMAKE_INSTALL= _RPATH=3D/gnu/store/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8.0= /lib" "-DCMAKE_VERBOSE_MAKEFILE=3DON" "-DENABLE_MPI:BOOL=3DON" "-DCMAKE_C_F= LAGS=3D-O2 -g -fcommon" "-DEXAMPLES_ENABLE_C:BOOL=3DON" "-DEXAMPLES_ENABLE_= CXX:BOOL=3DON" "-DEXAMPLES_ENABLE_F77:BOOL=3DON" "-DEXAMPLES_ENABLE_F90:BOO= L=3DON" "-DEXAMPLES_INSTALL:BOOL=3DOFF" "-DFCMIX_ENABLE:BOOL=3DON" "-DKLU_E= NABLE:BOOL=3DON" "-DKLU_INCLUDE_DIR=3D/gnu/store/cp95d1qfj1vsjn95rzj0f035rs= 966v0b-suitesparse-5.10.1/include" "-DKLU_LIBRARY_DIR=3D/gnu/store/cp95d1qf= j1vsjn95rzj0f035rs966v0b-suitesparse-5.10.1/lib") exit-status: 1 term-signa= l: #f stop-signal: #f>=20 phase `configure' failed after 3.2 seconds command "cmake" "../sundials-5.8.0" "-DCMAKE_BUILD_TYPE=3DRelWithDebInfo" "= -DCMAKE_INSTALL_PREFIX=3D/gnu/store/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundia= ls-openmpi-5.8.0" "-DCMAKE_INSTALL_LIBDIR=3Dlib" "-DCMAKE_INSTALL_RPATH_USE= _LINK_PATH=3DTRUE" "-DCMAKE_INSTALL_RPATH=3D/gnu/store/95ax5rqb6k1rkfii2i2n= nbjfazr58zvi-sundials-openmpi-5.8.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=3DON" "-= DENABLE_MPI:BOOL=3DON" "-DCMAKE_C_FLAGS=3D-O2 -g -fcommon" "-DEXAMPLES_ENAB= LE_C:BOOL=3DON" "-DEXAMPLES_ENABLE_CXX:BOOL=3DON" "-DEXAMPLES_ENABLE_F77:BO= OL=3DON" "-DEXAMPLES_ENABLE_F90:BOOL=3DON" "-DEXAMPLES_INSTALL:BOOL=3DOFF" = "-DFCMIX_ENABLE:BOOL=3DON" "-DKLU_ENABLE:BOOL=3DON" "-DKLU_INCLUDE_DIR=3D/g= nu/store/cp95d1qfj1vsjn95rzj0f035rs966v0b-suitesparse-5.10.1/include" "-DKL= U_LIBRARY_DIR=3D/gnu/store/cp95d1qfj1vsjn95rzj0f035rs966v0b-suitesparse-5.1= 0.1/lib" failed with status 1 builder for `/gnu/store/nrj3w5gmy3g00880hwh3gxkp3kgzpxgd-sundials-openmpi-5= .8.0.drv' failed with exit code 1 --8<---------------cut here---------------end--------------->8--- So it seems there=E2=80=99s a problem earlier than expected? Thanks, Ludo=E2=80=99. From debbugs-submit-bounces@debbugs.gnu.org Mon May 02 10:02:00 2022 Received: (at 55170) by debbugs.gnu.org; 2 May 2022 14:02:01 +0000 Received: from localhost ([127.0.0.1]:37629 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlWci-0004Jt-MK for submit@debbugs.gnu.org; Mon, 02 May 2022 10:02:00 -0400 Received: from mail-4022.proton.ch ([185.70.40.22]:62327) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlWcg-0004Ji-WA for 55170@debbugs.gnu.org; Mon, 02 May 2022 10:01:59 -0400 Date: Mon, 02 May 2022 14:01:48 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1651500111; bh=/vBw5MSh2mp3xTKRp7715GaVjfps0y7eKOK+ujLZinc=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=jqDs+a+8mSqlLTdShRT/lDNugr7MZWEvxTFmMzfuB7Kp/5AhapiMyC04/e1E9w8VL pUtUSBTljsLaLwGkXLWVx4zybu0yatw0rhc09cLKUcksu7CzULpTClL8FLbj/+sUUj 3qIz6MN5htemwdSPm3E2wfDfAovQbDC2sdqTBFlC/X5vQiBJfMrsA//mgQ41LCFtTt ToRMxcRPeKwgkBQIKIS49fR0nowwcTzM/5gTVqxCRX4Bo+zpw5un4oOAChXSB8/3v7 P3M5j5r6VDQr0hlba6N8++7PBEjpD8QyjczOmAGHZ7+IdFmBhAhr0Yn6YIf9aNsG01 I1H2cg/xl2TZQ== To: =?utf-8?Q?Ludovic_Court=C3=A8s?= From: "Paul A. Patience" Subject: Re: [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3. Message-ID: <8735hs3ugo.fsf@apatience.com> In-Reply-To: <87tuac85d8.fsf@inria.fr> References: <20220428181532.281677-1-paul@apatience.com> <87tuac85d8.fsf@inria.fr> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55170 Cc: 55170@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) On 2022-04-29 08:02:27-04:00, Ludovic Court=C3=A8s wrote: > "Paul A. Patience" skribis: >> This patch series must be applied on top of the v2 patches in bug#50080 = [1]. >> It adds SUNDIALS to deal.II's dependencies and updates deal.II to the la= test >> version. > > %exception #<&invoke-error program: "cmake" arguments: ("../sundials-5.8.= 0" "-DCMAKE_BUILD_TYPE=3DRelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=3D/gnu/sto= re/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8.0" "-DCMAKE_INSTAL= L_LIBDIR=3Dlib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=3DTRUE" "-DCMAKE_INSTA= LL_RPATH=3D/gnu/store/95ax5rqb6k1rkfii2i2nnbjfazr58zvi-sundials-openmpi-5.8= .0/lib" "-DCMAKE_VERBOSE_MAKEFILE=3DON" "-DENABLE_MPI:BOOL=3DON" "-DCMAKE_C= _FLAGS=3D-O2 -g -fcommon" "-DEXAMPLES_ENABLE_C:BOOL=3DON" "-DEXAMPLES_ENABL= E_CXX:BOOL=3DON" "-DEXAMPLES_ENABLE_F77:BOOL=3DON" "-DEXAMPLES_ENABLE_F90:B= OOL=3DON" "-DEXAMPLES_INSTALL:BOOL=3DOFF" "-DFCMIX_ENABLE:BOOL=3DON" "-DKLU= _ENABLE:BOOL=3DON" "-DKLU_INCLUDE_DIR=3D/gnu/store/cp95d1qfj1vsjn95rzj0f035= rs966v0b-suitesparse-5.10.1/include" "-DKLU_LIBRARY_DIR=3D/gnu/store/cp95d1= qfj1vsjn95rzj0f035rs966v0b-suitesparse-5.10.1/lib") exit-status: 1 term-sig= nal: #f stop-signal: #f> Did you apply the v2 patches (well, now v3) in bug#50080 [1]? The configure flags contain EXAMPLES_ENABLE_F77, among others, which I removed in bug#50080. Best regards, Paul [1]: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D50080 From debbugs-submit-bounces@debbugs.gnu.org Tue May 03 11:36:50 2022 Received: (at 55170) by debbugs.gnu.org; 3 May 2022 15:36:50 +0000 Received: from localhost ([127.0.0.1]:40704 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlua1-0007re-QT for submit@debbugs.gnu.org; Tue, 03 May 2022 11:36:49 -0400 Received: from eggs.gnu.org ([209.51.188.92]:38976) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlua0-0007rR-1h for 55170@debbugs.gnu.org; Tue, 03 May 2022 11:36:48 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:58886) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nluZu-0005K5-Mu; Tue, 03 May 2022 11:36:42 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:In-Reply-To:Date:References:Subject:To: From; bh=LP4+ouE7Q6zN54avcdSiD72PCx612S6RG8qssfFpF3U=; b=ovwSEsyDyXYQvri/bTO5 lqsYXg6vr91xu8cbXgQJt7RgfTBNFn6JWa+rT4XffbDWtnxN3mnsLPcGtLkPC6MH3Z3v+htU8+4Kc 9R8vlF2kzdJOycao3kCDS3jTleJEmUgms1zguczxzYfFb4UFWCeHv6Q0B5TjYQCt4s6+oz8uhr4he QMomtLfekOq837nE3T66BsBl6X/Ur12mNNt+aCXvrqh+rcCq+WaBmQX409C3tQgdOjclfQk8m3a4j uXiOLdebSd6j9o9vqYwgv3O9dvYAkmtBwH/eYWPi4C3wU2mx2TKioZBw7ft1u+IdK3TbA8rz7dFKn 3R6HoEFBenTq8A==; Received: from [193.50.110.83] (port=37210 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nluZu-0006s4-9y; Tue, 03 May 2022 11:36:42 -0400 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: "Paul A. Patience" Subject: Re: bug#55170: [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3. References: <20220428181532.281677-1-paul@apatience.com> <87tuac85d8.fsf@inria.fr> <8735hs3ugo.fsf@apatience.com> Date: Tue, 03 May 2022 17:36:39 +0200 In-Reply-To: <8735hs3ugo.fsf@apatience.com> (Paul A. Patience's message of "Mon, 02 May 2022 14:01:48 +0000") Message-ID: <877d72aarc.fsf_-_@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 55170 Cc: 55170@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) "Paul A. Patience" skribis: > Did you apply the v2 patches (well, now v3) in bug#50080 [1]? Oops, my bad. Retesting now=E2=80=A6 Ludo=E2=80=99. From debbugs-submit-bounces@debbugs.gnu.org Tue May 03 12:04:17 2022 Received: (at 55170-done) by debbugs.gnu.org; 3 May 2022 16:04:17 +0000 Received: from localhost ([127.0.0.1]:40734 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlv0b-0000FE-6G for submit@debbugs.gnu.org; Tue, 03 May 2022 12:04:17 -0400 Received: from mail2-relais-roc.national.inria.fr ([192.134.164.83]:55144) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nlv0X-0000Ew-PH for 55170-done@debbugs.gnu.org; Tue, 03 May 2022 12:04:15 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:references:date:in-reply-to: message-id:mime-version:content-transfer-encoding; bh=FMAYr2BB/EOulLbt6UcTNc6rIvRpNjZovC0rfs0Qy9Y=; b=WWxwS9QDzFOxrd7xtQ5RDr+4iInaTObN/ItCwoM4gbNOKHCDpRtkgN8h /sAn8Rvkyc1J36bLJmPndmNBKIHDEfYzogTTKipzRrhTwkCzlzztnqfLx Awqfq9kf41/N0P0V8tEbWvaazFixS54fcBMYf7kjT0S6jTKQ70P41TV61 0=; Authentication-Results: mail2-relais-roc.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=ludovic.courtes@inria.fr; dmarc=fail (p=none dis=none) d=inria.fr X-IronPort-AV: E=Sophos;i="5.91,195,1647298800"; d="scan'208";a="34531279" Received: from unknown (HELO ribbon) ([193.50.110.83]) by mail2-relais-roc.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 03 May 2022 18:04:07 +0200 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: "Paul A. Patience" Subject: Re: bug#55170: [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3. References: <20220428181532.281677-1-paul@apatience.com> Date: Tue, 03 May 2022 18:04:06 +0200 In-Reply-To: <20220428181532.281677-1-paul@apatience.com> (Paul A. Patience's message of "Thu, 28 Apr 2022 18:15:39 +0000") Message-ID: <871qxaa9hl.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 55170-done Cc: 55170-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hi again, "Paul A. Patience" skribis: > gnu: sundials: Add 5.8.0. > gnu: dealii: Remove trailing booleans. > gnu: dealii-openmpi: Remove input labels. > gnu: dealii: Add SUNDIALS dependency. > gnu: dealii: Update to 9.3.3. Pushed as 8b2d26660717a0f352da54acd68e0d61a7c697df. Works like a charm now, thanks! Ludo=E2=80=99. From unknown Tue Jun 17 01:49:14 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Wed, 01 Jun 2022 11:24:07 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator