GNU bug report logs - #55144
[PATCH] gnu: Add r-affyrnadegradation.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#55144: closed (Re: [bug#55144] [PATCH] gnu: Add
 r-affyrnadegradation.)
Date: Wed, 27 Apr 2022 14:22:02 +0000

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Your bug report

#55144: [PATCH] gnu: Add r-affyrnadegradation.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 55144 <at> debbugs.gnu.org.

-- 
55144: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=55144
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 55144-done <at> debbugs.gnu.org
Subject: Re: [bug#55144] [PATCH] gnu: Add r-affyrnadegradation.
Date: Wed, 27 Apr 2022 16:21:02 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.

Applied, thanks!

-- 
Ricardo

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-affyrnadegradation.
Date: Wed, 27 Apr 2022 12:56:14 +0200

* gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 67ee6079c6..82aaf547a7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1664,6 +1664,31 @@ (define-public r-adamgui
 the @code{GFAGpathUi} function.")
     (license license:gpl2+)))
 
+(define-public r-affyrnadegradation
+  (package
+    (name "r-affyrnadegradation")
+    (version "1.40.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AffyRNADegradation" version))
+              (sha256
+               (base32
+                "00hzr62xn1i1w4g8krsxhivzwn8hd7hwhkdxyrpz6cs9vgr4x9kd"))))
+    (properties `((upstream-name . "AffyRNADegradation")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-affy))
+    (home-page "https://bioconductor.org/packages/AffyRNADegradation")
+    (synopsis
+     "Analyze and correct probe positional bias in data due to RNA degradation")
+    (description
+     "The @code{AffyRNADegradation} package helps with the assessment and
+correction of RNA degradation effects in Affymetrix 3' expression arrays.  The
+parameter @code{d} gives a robust and accurate measure of RNA integrity.  The
+correction removes the probe positional bias, and thus improves comparability
+of samples that are affected by RNA degradation.")
+    ;; the R file header specifies GPL2 or later
+    (license license:gpl2+)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: 4fb6ef6636acd7608889639c1b2e492517256f76
-- 
2.34.0

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