From debbugs-submit-bounces@debbugs.gnu.org Tue Apr 26 11:25:19 2022 Received: (at submit) by debbugs.gnu.org; 26 Apr 2022 15:25:19 +0000 Received: from localhost ([127.0.0.1]:40266 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njN43-0008PC-GV for submit@debbugs.gnu.org; Tue, 26 Apr 2022 11:25:19 -0400 Received: from lists.gnu.org ([209.51.188.17]:60402) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njN41-0008P4-MW for submit@debbugs.gnu.org; Tue, 26 Apr 2022 11:25:18 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:56808) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1njN41-0006QF-Ft for guix-patches@gnu.org; Tue, 26 Apr 2022 11:25:17 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:59731) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1njN3y-0000g0-MQ for guix-patches@gnu.org; Tue, 26 Apr 2022 11:25:16 -0400 Received: from localhost (localhost [127.0.0.1]) by a2062.mx.srv.dfn.de (Postfix) with ESMTP id 4CFFEA0184 for ; Tue, 26 Apr 2022 17:25:09 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1650986708; x=1652801109; bh=Ir4XHACFTPlZgmVmJo2ijIU23MZ7GXtgsx3VO8wgLME=; b=YDH16t/SUmhF dARGAACikxpn+vpOs0ZjV52KDEqvQ5x8mBpvAtlMdrtwiMj1NXKDG17kU3tU0hFR orA6T+tg6/I+IaJLcmoZ/hmc+cLfQrhwoFz1IJsrSClO+s+4IU5nd9HK3lit+nfn xzukzftUjPLbswspoBtAmtb0ME2fe/Y= Received: from a2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-han.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id 1Ep8uvgTtfMX for ; Tue, 26 Apr 2022 17:25:08 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 26 Apr 2022 17:25:08 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2375.24; Tue, 26 Apr 2022 17:25:07 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-affixcan. Date: Tue, 26 Apr 2022 17:24:55 +0200 Message-ID: <20220426152455.17387-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.34.0 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1000-26858.000 X-TM-AS-Result: No-10--6.779400-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCwyLlxWhS9T9iOwf9uRq1AiycO hvTXTlouSkIUZyUQUJxJTjjs9yT6Yo8WMkQWv6iXBcIE78YqRWvcUt5lc1lLgNedi3nDhxyOAdc X2zDkOeiAqwXSxSoYzf9znWNVSI55Z+zSGB7rwH1prOiCoANhuNYzeFjMK+No= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.779400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1000-26858.000 X-TM-SNTS-SMTP: B14D5FA27A1E9C2E9C08F2959EE11FEEDDC4C9A2E20A6F783C79525FA0330B6D2000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-affixcan): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fa862d736f..925ebcdbdc 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1616,6 +1616,31 @@ (define-public r-adam functionally associated genes} (GFAG).") (license license:gpl2+))) +(define-public r-affixcan + (package + (name "r-affixcan") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AffiXcan" version)) + (sha256 + (base32 + "06yn87briv2141jqad934gg5rcd90w5nghrgmbhqnmwafn72gj9d")))) + (properties `((upstream-name . "AffiXcan"))) + (build-system r-build-system) + (propagated-inputs (list r-biocparallel r-crayon r-multiassayexperiment + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AffiXcan") + (synopsis "Functional approach to impute genetically regulated expression") + (description + "The @code{AffiXcan} package imputes a @dfn{Genetically regulated +expression} (GReX) for a set of genes in a sample of individuals, using a method +based on the @dfn{total binding affinity} (TBA). Statistical models to impute +GReX can be trained with a training dataset where the real total expression +values are known.") + (license license:gpl3))) + (define-public r-aneufinder (package (name "r-aneufinder") base-commit: 30ff557bd7255dddec16f4a032e58f5a88d5e448 -- 2.34.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Apr 27 10:10:51 2022 Received: (at 55128-done) by debbugs.gnu.org; 27 Apr 2022 14:10:51 +0000 Received: from localhost ([127.0.0.1]:43814 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njiNX-0007HN-Ab for submit@debbugs.gnu.org; Wed, 27 Apr 2022 10:10:51 -0400 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21016) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njiNV-0007HF-A9 for 55128-done@debbugs.gnu.org; Wed, 27 Apr 2022 10:10:49 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1651068647; cv=none; d=zohomail.com; s=zohoarc; b=DUxpHTFvuOlb9iqKFfXcv72PnhAB2M6psB28GGb34W5Qas8AQC52WpJOKrsLf12Bma5VMUFk1hwA5KMT2l1Iwlzzm988Oa6iAF4x5WLJAUsoZKjjfCeuJ4ewHzO1AtKRpmJGyCCvxOTNfPXIFo8xYiGmlfgTfYJGaZTamjq0znE= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1651068647; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=H9YK+CjVlCvOpbEFPdjp/YCWJu5k2mlTbLKvAU1ZFVM=; b=egU1MxMHc1KoH85pzm4rWODiO2QcFP5IVQ4ewwKfa0Bq61gg7l5iEW6JBZM3fa0Ph02dZnp+Ozj/wtH9cg+LNtF6jUoZATRO+p/gN+bWSZmemdwN2kbSv9sBf7YGwGT8k3iAuUf1shXi9bkRmQNidSKe8XEvpNtnOk4T23pvl+Q= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1651068647; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=H9YK+CjVlCvOpbEFPdjp/YCWJu5k2mlTbLKvAU1ZFVM=; b=McAoWJ52tEr7FjKhENhFX0VOFNyiabk/gPnL1Ccf8Ck9nCpQzzG21JV5835wkxBd d4YOFe/7MIxwZSIbJv1DUmYAtRbba/KBNX1N6VdbopE3pVyWGIf0diiy7eL4/9Dooyl sHiTPaNSAIGSV/09zmcMAKEldANIv00ntqdYYANo= Received: from localhost (56-111-142-46.pool.kielnet.net [46.142.111.56]) by mx.zohomail.com with SMTPS id 1651068644402764.9891697683561; Wed, 27 Apr 2022 07:10:44 -0700 (PDT) References: <20220426152455.17387-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.6.10; emacs 28.0.50 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#55128] [PATCH] gnu: Add r-affixcan. Date: Wed, 27 Apr 2022 16:10:20 +0200 In-reply-to: <20220426152455.17387-1-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87k0ba4nxa.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55128-done Cc: 55128-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/bioconductor.scm (r-affixcan): New variable. Applied with stylistic changes, thank you! --=20 Ricardo From unknown Thu Aug 21 12:10:28 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Thu, 26 May 2022 11:24:06 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator