GNU bug report logs - #55127
[PATCH] gnu: Add r-adsplit.

Previous Next

Full log

View this message in rfc822 format

From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#55127: closed ([PATCH] gnu: Add r-adsplit.)
Date: Wed, 27 Apr 2022 14:11:02 +0000

[Message part 1 (text/plain, inline)]

Your message dated Wed, 27 Apr 2022 16:09:53 +0200
with message-id <87o80m4ny6.fsf <at> elephly.net>
and subject line Re: [bug#55127] [PATCH] gnu: Add r-adsplit.
has caused the debbugs.gnu.org bug report #55127,
regarding [PATCH] gnu: Add r-adsplit.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
55127: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=55127
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-adsplit.
Date: Tue, 26 Apr 2022 16:07:09 +0200

* gnu/packages/bioconductor.scm (r-adsplit): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fa862d736f..f0a7359590 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1616,6 +1616,33 @@ (define-public r-adam
 functionally associated genes} (GFAG).")
     (license license:gpl2+)))
 
+(define-public r-adsplit
+  (package
+    (name "r-adsplit")
+    (version "1.64.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "adSplit" version))
+              (sha256
+               (base32
+                "1b4ck371h3a76m5h0brvlzsyg1g6q5fjrhra5hqv9pwxr330h9r2"))))
+    (properties `((upstream-name . "adSplit")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-annotationdbi
+                             r-biobase
+                             r-cluster
+                             r-go-db
+                             r-keggrest
+                             r-multtest))
+    (home-page "http://compdiag.molgen.mpg.de/software/adSplit.shtml")
+    (synopsis "Annotation-driven splits in microarray data")
+    (description
+     "This package implements clustering of microarray gene expression profiles
+according to functional annotations.  For each term genes are annotated to,
+splits into two subclasses are computed and a significance of the supporting
+gene set is determined.")
+    (license license:gpl2+)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: 30ff557bd7255dddec16f4a032e58f5a88d5e448
-- 
2.34.0

[Message part 3 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 55127-done <at> debbugs.gnu.org
Subject: Re: [bug#55127] [PATCH] gnu: Add r-adsplit.
Date: Wed, 27 Apr 2022 16:09:53 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioconductor.scm (r-adsplit): New variable.

Applied with stylistic changes.  Thank you!

-- 
Ricardo

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.