Subject: bug#55127: closed (Re: [bug#55127] [PATCH] gnu: Add r-adsplit.)

From: [email-masked] (GNU bug Tracking System)
Date: Wed, 27 Apr 2022 14:11:03 +0000

Your bug report

#55127: [PATCH] gnu: Add r-adsplit.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
55127: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=55127
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: Re: [bug#55127] [PATCH] gnu: Add r-adsplit.
From: Ricardo Wurmus <[email-masked]>
To: Mădălin Ionel Patrașcu<[email-masked]>
Cc: [email-masked]
Date: Wed, 27 Apr 2022 16:09:53 +0200
List-Id: <debbugs-submit.debbugs.gnu.org>

Mădălin Ionel Patrașcu <[email-masked]> writes:

> * gnu/packages/bioconductor.scm (r-adsplit): New variable.

Applied with stylistic changes.  Thank you!

-- 
Ricardo

Subject: [PATCH] gnu: Add r-adsplit.
From: Mădălin Ionel Patrașcu<[email-masked]>
To: <[email-masked]>
Date: Tue, 26 Apr 2022 16:07:09 +0200
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/bioconductor.scm (r-adsplit): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fa862d736f..f0a7359590 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1616,6 +1616,33 @@ (define-public r-adam
 functionally associated genes} (GFAG).")
     (license license:gpl2+)))
 
+(define-public r-adsplit
+  (package
+    (name "r-adsplit")
+    (version "1.64.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "adSplit" version))
+              (sha256
+               (base32
+                "1b4ck371h3a76m5h0brvlzsyg1g6q5fjrhra5hqv9pwxr330h9r2"))))
+    (properties `((upstream-name . "adSplit")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-annotationdbi
+                             r-biobase
+                             r-cluster
+                             r-go-db
+                             r-keggrest
+                             r-multtest))
+    (home-page "http://compdiag.molgen.mpg.de/software/adSplit.shtml")
+    (synopsis "Annotation-driven splits in microarray data")
+    (description
+     "This package implements clustering of microarray gene expression profiles
+according to functional annotations.  For each term genes are annotated to,
+splits into two subclasses are computed and a significance of the supporting
+gene set is determined.")
+    (license license:gpl2+)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: 30ff557bd7255dddec16f4a032e58f5a88d5e448
-- 
2.34.0