From unknown Wed Aug 20 05:15:47 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#55127] [PATCH] gnu: Add r-adsplit. 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Tue, 26 Apr 2022 16:08:55 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 26 Apr 2022 16:08:55 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2375.24; Tue, 26 Apr 2022 16:08:54 +0200 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Tue, 26 Apr 2022 16:07:09 +0200 Message-ID: <20220426140709.16637-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.34.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1000-26858.000 X-TM-AS-Result: No-10--2.592800-5.000000 X-TMASE-MatchedRID: n8dyCgqCzuv/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90Badv+F8ucSIMKPrF7dK57MQtuqs6BbPJ+mZ/GZomYPm2Lg EVfggSliMZBHIGOaSwLTPBbG10yl0zXbS98W2X3hegGFizQVlhgK0ZgbTOeKUyiLz1Vtc/pWYDT IhMw3OOX0tCKdnhB58hYfw868k05b3PDiXO/tFSfcUt5lc1lLgNedi3nDhxyOAdcX2zDkOehzyh VEwu3PANQ6A0xRsnDFn5OWwkeNf/cBnYsR7xjtn59uGHPKO1nCqqxEnafLmklB/qs67xJrXAX/U 4UoqwKaH0FXPHcHm18NhJB9vAxVGtOdWe/Uk/vuwZO9kmaWWvP8+E8vSQCkfySOb56URxsg= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.592800-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1000-26858.000 X-TM-SNTS-SMTP: 7AECF1DDFFA167AED83C06CC11978FA975E0005209E27BED513BEA27533A49DA2000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-adsplit): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fa862d736f..f0a7359590 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1616,6 +1616,33 @@ (define-public r-adam functionally associated genes} (GFAG).") (license license:gpl2+))) +(define-public r-adsplit + (package + (name "r-adsplit") + (version "1.64.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "adSplit" version)) + (sha256 + (base32 + "1b4ck371h3a76m5h0brvlzsyg1g6q5fjrhra5hqv9pwxr330h9r2")))) + (properties `((upstream-name . "adSplit"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-biobase + r-cluster + r-go-db + r-keggrest + r-multtest)) + (home-page "http://compdiag.molgen.mpg.de/software/adSplit.shtml") + (synopsis "Annotation-driven splits in microarray data") + (description + "This package implements clustering of microarray gene expression profiles +according to functional annotations. For each term genes are annotated to, +splits into two subclasses are computed and a significance of the supporting +gene set is determined.") + (license license:gpl2+))) + (define-public r-aneufinder (package (name "r-aneufinder") base-commit: 30ff557bd7255dddec16f4a032e58f5a88d5e448 -- 2.34.0 From unknown Wed Aug 20 05:15:47 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Subject: bug#55127: closed (Re: [bug#55127] [PATCH] gnu: Add r-adsplit.) Message-ID: References: <87o80m4ny6.fsf@elephly.net> <20220426140709.16637-1-madalinionel.patrascu@mdc-berlin.de> X-Gnu-PR-Message: they-closed 55127 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 55127@debbugs.gnu.org Date: Wed, 27 Apr 2022 14:11:03 +0000 Content-Type: multipart/mixed; boundary="----------=_1651068663-28032-1" This is a multi-part message in MIME format... ------------=_1651068663-28032-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #55127: [PATCH] gnu: Add r-adsplit. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 55127@debbugs.gnu.org. --=20 55127: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D55127 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1651068663-28032-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 55127-done) by debbugs.gnu.org; 27 Apr 2022 14:10:32 +0000 Received: from localhost ([127.0.0.1]:43811 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njiNE-0007Gc-2X for submit@debbugs.gnu.org; Wed, 27 Apr 2022 10:10:32 -0400 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21001) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njiNC-0007GS-4W for 55127-done@debbugs.gnu.org; Wed, 27 Apr 2022 10:10:30 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1651068627; cv=none; d=zohomail.com; s=zohoarc; b=APLskX/+eIEHbsOJU25JqEoNGJ1Vp0BQzTNSiOymfMAeAmZwrPTl4bX/FCgiuVhhM4SnrS9yz4Z+me9hMPJrr5Xk9O3DLR5j871IUcyJXtP16Jwb4Sc0/JUailPjsFVghoMRc4BkmrBiqn1zCrD5FGwCJva80JW/I5w1YV7DvCg= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1651068627; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=Rb+j842tuEn3r2Gd9vqnhN/CBUA8L0y0a3dPpJZ6vDc=; b=IKkEBVNhSvlMen9mRMe+pd6ScvN4dPz2/FzJZ8+J9eY6K8rE6E13DEf2649SsR5Qfvf+S+qT/8o/xfwQXekQnDLSyUknDHIjmlRNf4IXTpSrini3rw3+e3ohX4ACaIYGopZLTEhdL27yNtS3s26PijGtYHVmyZcq+6BYegyzrPo= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1651068627; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=Rb+j842tuEn3r2Gd9vqnhN/CBUA8L0y0a3dPpJZ6vDc=; b=Y+anpHIP9vOysK1wVnL6WZJbQ6P5ga5NVmv5V4jL0tCkhLPOhTgqYlE9+4OGaK86 aePf+yiYIJh93Ud50NrIX0Kyy6u5RTnOmaR8yOiVOae/vSimKoTC/rhNMUusE2HoEhi 47kbiHxIOlZlciC5CtDU5Qh5Sk/feyO3DM6HcX+4= Received: from localhost (56-111-142-46.pool.kielnet.net [46.142.111.56]) by mx.zohomail.com with SMTPS id 1651068613049820.0247993564526; Wed, 27 Apr 2022 07:10:13 -0700 (PDT) References: <20220426140709.16637-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.6.10; emacs 28.0.50 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#55127] [PATCH] gnu: Add r-adsplit. Date: Wed, 27 Apr 2022 16:09:53 +0200 In-reply-to: <20220426140709.16637-1-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87o80m4ny6.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55127-done Cc: 55127-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/bioconductor.scm (r-adsplit): New variable. Applied with stylistic changes. Thank you! --=20 Ricardo ------------=_1651068663-28032-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 26 Apr 2022 14:09:04 +0000 Received: from localhost ([127.0.0.1]:40211 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njLsF-00025S-Tg for submit@debbugs.gnu.org; Tue, 26 Apr 2022 10:09:04 -0400 Received: from lists.gnu.org ([209.51.188.17]:41226) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1njLsF-00025M-2G for submit@debbugs.gnu.org; Tue, 26 Apr 2022 10:09:03 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:36380) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1njLsE-00015E-Uf for guix-patches@gnu.org; Tue, 26 Apr 2022 10:09:02 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:56469) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1njLsC-0004F3-08 for guix-patches@gnu.org; Tue, 26 Apr 2022 10:09:02 -0400 Received: from localhost (localhost [127.0.0.1]) by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 48155300150 for ; Tue, 26 Apr 2022 16:08:56 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received:received:received; s=mdc; t=1650982135; x=1652796536; bh=t7LZq2+bc3EfK7QdAr70Dn/Z/7JpKcmR+buXn1FpN7M=; b=O7Q82q+iV9RJ wkydInwJLYFFbsxcCS9/avv/aE9R2tJQL1maOAQOYt9cK2dPug4RcS8cprhVXnxS S+j1dF7RPTgMWUAJux3p2F8/o86WMHJp/4PqWini2cg2zfzQyEcsyZfFflVi7d10 TglJC88yFbKSoPEY8CCIIEnFSTDHmls= Received: from c2062.mx.srv.dfn.de ([127.0.0.1]) by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134) with ESMTP id sd4hcd-FCtE0 for ; Tue, 26 Apr 2022 16:08:55 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS for ; Tue, 26 Apr 2022 16:08:55 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2375.24; Tue, 26 Apr 2022 16:08:54 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-adsplit. Date: Tue, 26 Apr 2022 16:07:09 +0200 Message-ID: <20220426140709.16637-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.34.0 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1000-26858.000 X-TM-AS-Result: No-10--2.592800-5.000000 X-TMASE-MatchedRID: n8dyCgqCzuv/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90Badv+F8ucSIMKPrF7dK57MQtuqs6BbPJ+mZ/GZomYPm2Lg EVfggSliMZBHIGOaSwLTPBbG10yl0zXbS98W2X3hegGFizQVlhgK0ZgbTOeKUyiLz1Vtc/pWYDT IhMw3OOX0tCKdnhB58hYfw868k05b3PDiXO/tFSfcUt5lc1lLgNedi3nDhxyOAdcX2zDkOehzyh VEwu3PANQ6A0xRsnDFn5OWwkeNf/cBnYsR7xjtn59uGHPKO1nCqqxEnafLmklB/qs67xJrXAX/U 4UoqwKaH0FXPHcHm18NhJB9vAxVGtOdWe/Uk/vuwZO9kmaWWvP8+E8vSQCkfySOb56URxsg= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.592800-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1000-26858.000 X-TM-SNTS-SMTP: 7AECF1DDFFA167AED83C06CC11978FA975E0005209E27BED513BEA27533A49DA2000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-adsplit): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fa862d736f..f0a7359590 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1616,6 +1616,33 @@ (define-public r-adam functionally associated genes} (GFAG).") (license license:gpl2+))) +(define-public r-adsplit + (package + (name "r-adsplit") + (version "1.64.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "adSplit" version)) + (sha256 + (base32 + "1b4ck371h3a76m5h0brvlzsyg1g6q5fjrhra5hqv9pwxr330h9r2")))) + (properties `((upstream-name . "adSplit"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-biobase + r-cluster + r-go-db + r-keggrest + r-multtest)) + (home-page "http://compdiag.molgen.mpg.de/software/adSplit.shtml") + (synopsis "Annotation-driven splits in microarray data") + (description + "This package implements clustering of microarray gene expression profiles +according to functional annotations. For each term genes are annotated to, +splits into two subclasses are computed and a significance of the supporting +gene set is determined.") + (license license:gpl2+))) + (define-public r-aneufinder (package (name "r-aneufinder") base-commit: 30ff557bd7255dddec16f4a032e58f5a88d5e448 -- 2.34.0 ------------=_1651068663-28032-1--