Subject: [PATCH 2/9] gnu: tabixpp: Use #:make-flags.

From: Arun Isaac <[email-masked]>
Date: Tue, 26 Apr 2022 18:16:32 +0530

* gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Do not override the
build phase. Move the required make arguments to #:make-flags. Add
build-libraries phase.
---
 gnu/packages/bioinformatics.scm | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 774da809d8..6c24c1c26f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14279,18 +14279,18 @@ (define-public tabixpp
    (inputs
     (list htslib zlib))
    (arguments
-    (list #:tests? #f ; There are no tests to run.
+    (list #:make-flags #~(list "HTS_HEADERS="
+                               (string-append "HTS_LIB="
+                                              (search-input-file %build-inputs
+                                                                 "/lib/libhts.a"))
+                               "INCLUDES=")
+          #:tests? #f ; There are no tests to run.
           #:phases
           #~(modify-phases %standard-phases
               (delete 'configure) ; There is no configure phase.
-              ;; The build phase needs overriding the location of htslib.
-              (replace 'build
+              ;; Build shared and static libraries.
+              (add-after 'build 'build-libraries
                 (lambda* (#:key inputs #:allow-other-keys)
-                  (invoke "make"
-                          (string-append "HTS_LIB=" (search-input-file inputs "/lib/libhts.a"))
-                          (string-append "INCLUDES= -I" (search-input-directory inputs "/include/htslib"))
-                          "HTS_HEADERS=" ; No need to check for headers here.
-                          (string-append "LIBPATH=-L. -L" (search-input-directory inputs "/include")))
                   (invoke "g++" "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts")
                   (invoke "ar" "rcs" "libtabixpp.a" "tabix.o")))
               (replace 'install
-- 
2.35.1